ANK3: Ankyrin-3 Gene – Key Roles in Neuronal Development and Bipolar Disorder

Comprehensive biomedical overview of ANK3, encoding ankyrin-G, with clinical relevance to neuropsychiatric disorders and cancer.

Gene Information Card

Symbol ANK3
Full Name Ankyrin 3
Gene Type Protein coding
Chromosomal Location 10q21.2
NCBI Gene ID 288 ncbi.nlm.nih.gov/gene/288
Ensembl ID ENSG00000157510
UniProt ID Q12955
OMIM ID 600465
HGNC ID 494
Aliases ANK-3, ankyrin-G, MRT37

Description

ANK3 encodes ankyrin-G, a member of the ankyrin family that links integral membrane proteins to the spectrin-actin cytoskeleton. Ankyrin-G is essential for the clustering of voltage-gated sodium channels at axon initial segments and nodes of Ranvier, and plays critical roles in neuronal polarity, synaptic plasticity, and cardiac excitability. Variants in ANK3 are strongly associated with bipolar disorder, schizophrenia, and autism spectrum disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Bipolar disorder Disruption of ankyrin-G scaffolding at axon initial segments alters neuronal excitability and signaling GWAS: Ferreira et al. 2008, PMID: 18179893
Autism spectrum disorder Rare de novo loss-of-function variants impair synaptic organization Exome sequencing: Iossifov et al. 2014, PMID: 25363760
Schizophrenia Common variants affect ANK3 expression and sodium channel clustering PGC meta-analysis: Schizophrenia Working Group 2014, PMID: 25056061
Intellectual disability Homozygous truncating mutations cause MRT37 with severe cognitive impairment OMIM #615493, PMID: 23934111

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 33.2 High
Cerebellum 28.5 High
Heart 12.1 Medium
Skeletal muscle 8.4 Medium
Liver 2.3 Low
Kidney 5.7 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 45.6 Neuronal model
U-87 MG (glioblastoma) 38.2 Glial origin
HEK 293 (embryonic kidney) 12.0 Low endogenous expression
HepG2 (hepatocellular carcinoma) 3.1 Minimal expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.427C>T (p.Arg143*) Nonsense Rare Loss of function; associated with intellectual disability
c.3892G>A (p.Glu1298Lys) Missense 0.01% (gnomAD) Alters spectrin-binding domain; bipolar disorder risk
c.5410_5411del (p.Leu1804Valfs*3) Frameshift Rare Truncation; autism spectrum disorder
rs9804190 (intronic) SNV Common (MAF 0.35) Expression QTL; bipolar disorder GWAS hit
Mutation functional classification

Loss of Function (LOF)

Nonsense and frameshift mutations (e.g., p.Arg143*, p.Leu1804Valfs*3) lead to haploinsufficiency or truncated protein, impairing cytoskeletal anchoring and ion channel clustering.

Gain of Function (GOF)

No well-characterized gain-of-function mutations reported in ANK3.

Dominant Negative (DN)

Some missense variants in the spectrin-binding domain may interfere with wild-type ankyrin-G function, but dominant-negative effects are not firmly established.

Gene Ontology (GO)

• GO:0005856 – cytoskeleton • GO:0008092 – cytoskeletal protein binding
• GO:0030507 – spectrin binding • GO:0045202 – synapse
• GO:0043197 – dendritic spine • GO:0001518 – voltage-gated sodium channel clustering
• GO:0043025 – neuronal cell body • GO:0005886 – plasma membrane

Pathways

REACTOME: R-HSA-5576892 – Phase 0 – rapid depolarisation
REACTOME: R-HSA-5576893 – Phase 1 – inactivation of fast Na+ channels
REACTOME: R-HSA-112316 – Neuronal System
KEGG: hsa05414 – Dilated cardiomyopathy (ankyrin-G role in cardiac conduction)

Protein Summary

Ankyrin-G (UniProt Q12955) is a 4801-amino acid protein with multiple isoforms. It contains an N-terminal membrane-binding domain (MBD) that interacts with ion channels and cell adhesion molecules, a spectrin-binding domain (SBD) that links to the cytoskeleton, and a C-terminal regulatory domain. Ankyrin-G is critical for the assembly and maintenance of the axon initial segment and nodes of Ranvier, where it clusters voltage-gated sodium channels (Nav1.2, Nav1.6) and neurofascin. It also organizes the cardiac intercalated disc and is implicated in bipolar disorder, autism, and cardiac arrhythmias.

Related Products

Product name Cat.No. Species Gene ID
SHANK3 Knockout HEK293 Cell Line EDJ-KQ2753 Human 85358 Details Get a Quote
KANK3 Knockout HEK293 Cell Line EDJ-KQ11850 Human 256949 Details Get a Quote
ANK3 Knockout HEK293 Cell Line EDJ-KQ12041 Human 288 Details Get a Quote
SHANK3 Knockout A-549 Cell Line EDJ-KQ25033 Human 85358 Details Get a Quote
SHANK3 Knockout HCT 116 Cell Line EDJ-KQ25034 Human 85358 Details Get a Quote
SHANK3 Knockout HeLa Cell Line EDJ-KQ25035 Human 85358 Details Get a Quote
KANK3 Knockout A-549 Cell Line EDJ-KQ40274 Human 256949 Details Get a Quote
KANK3 Knockout HCT 116 Cell Line EDJ-KQ40275 Human 256949 Details Get a Quote
ANK3 Knockout A-549 Cell Line EDJ-KQ40670 Human 288 Details Get a Quote
ANK3 Knockout HCT 116 Cell Line EDJ-KQ40671 Human 288 Details Get a Quote
ANK3 Knockout HeLa Cell Line EDJ-KQ40672 Human 288 Details Get a Quote
PANK3 Knockout HEK293 Cell Line EDJ-KQ51688 Human 79646 Details Get a Quote
PANK3 Knockout HeLa Cell Line EDJ-KQ57198 Human 79646 Details Get a Quote
KANK3 Knockout HeLa Cell Line EDJ-KQ59313 Human 256949 Details Get a Quote
PANK3 Knockout A-549 Cell Line EDJ-KQ65710 Human 79646 Details Get a Quote
Displaying Records 1 To 15 Of 16 Records
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