AGAP2 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2)

A multi-domain signaling protein implicated in cancer and neuronal development

Gene Information Card

Symbol AGAP2
Full Name ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2
Gene Type protein-coding
Chromosomal Location 12q14.1
NCBI Gene ID 116986 ncbi.nlm.nih.gov/gene/116986
Ensembl ID ENSG00000135446
UniProt ID Q9Y2P5
OMIM ID 608651
HGNC ID 16921
Aliases PIKE, CENTG2, GGAP2, KIAA0167

Description

AGAP2 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2) encodes a multidomain protein that functions as both a GTPase-activating protein (GAP) for Arf family small GTPases and a GTPase itself. The protein contains an N-terminal GTPase domain, a central ArfGAP domain, an ankyrin repeat region, and a pleckstrin homology (PH) domain. AGAP2 is involved in cell signaling, cytoskeletal dynamics, and vesicle trafficking. It is highly expressed in the brain and has been implicated in neuronal development, synaptic function, and cancer progression, particularly in glioblastoma and other malignancies.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Glioblastoma AGAP2 overexpression promotes tumor cell proliferation and invasion via PI3K/Akt signaling activation PMID: 21502514; COSMIC
Breast cancer AGAP2 amplification and overexpression correlate with poor prognosis and enhanced metastatic potential PMID: 23104886; COSMIC
Lung cancer AGAP2 upregulation contributes to chemoresistance through activation of NF-κB pathway PMID: 25944712; COSMIC
Neurodevelopmental disorders AGAP2 variants associated with autism spectrum disorder and intellectual disability PMID: 27569545; ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 15.2 High
Testis 8.7 Medium
Lung 5.3 Medium
Breast 3.1 Low
Colon 2.8 Low
Cell Line Expression
Cell Line nTPM Notes
U87MG (glioblastoma) 18.5 Overexpressed compared to normal astrocytes
MCF7 (breast cancer) 12.1 Moderate expression
A549 (lung cancer) 9.8 Elevated relative to normal lung
HEK293 (embryonic kidney) 6.4 Baseline expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.214C>T (p.Arg72Trp) Missense 0.02% Altered GTPase activity; reported in autism spectrum disorder (ClinVar)
c.1024G>A (p.Glu342Lys) Missense 0.01% Reduced ArfGAP activity; associated with intellectual disability (ClinVar)
Amplification Copy number gain 5-10% in glioblastoma Increased gene dosage; linked to poor prognosis (COSMIC)
c.1567_1569del (p.Lys523del) In-frame deletion <0.01% Loss of PH domain function; rare in cancer (COSMIC)
Mutation functional classification

Loss of Function (LOF)

Missense variants in the ArfGAP domain (e.g., p.Glu342Lys) impair GAP activity, leading to dysregulated Arf signaling.

Gain of Function (GOF)

Gene amplification and overexpression in cancers enhance PI3K/Akt signaling, promoting cell survival and proliferation.

Dominant Negative (DN)

No well-characterized dominant-negative mutations have been reported for AGAP2.

Gene Ontology (GO)

• GTPase activator activity (GO:0005096) • GTP binding (GO:0005525)
• Phosphatidylinositol binding (GO:0035091) • Regulation of cell migration (GO:0030334)
• Positive regulation of phosphatidylinositol 3-kinase signaling (GO:0014068) • Intracellular signal transduction (GO:0035556)

Pathways

PI3K-Akt signaling pathway (Reactome: R-HSA-1257604)
Arf family GTPase cycle (Reactome: R-HSA-9007101)
Signaling by Receptor Tyrosine Kinases (Reactome: R-HSA-9006934)

Protein Summary

The AGAP2 protein (also known as PIKE) is a 998-amino acid multidomain protein that integrates GTPase and ArfGAP activities. It localizes to the cytoplasm and plasma membrane, where it interacts with phosphoinositides via its PH domain. AGAP2 acts as a scaffold linking receptor tyrosine kinases to PI3K activation, thereby promoting cell growth and survival. In the nervous system, it regulates dendritic spine morphology and synaptic plasticity. Aberrant AGAP2 expression or mutation contributes to oncogenesis and neurodevelopmental disorders.

Related Products

Product name Cat.No. Species Gene ID
AGAP2 Knockout HEK293 Cell Line EDJ-KQ921 Human 116986 Details Get a Quote
AGAP2 Knockout HCT 116 Cell Line EDJ-KQ21179 Human 116986 Details Get a Quote
AGAP2 Knockout HeLa Cell Line EDJ-KQ58002 Human 116986 Details Get a Quote
AGAP2 Knockout A-549 Cell Line EDJ-KQ66489 Human 116986 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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