AGAP2 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2)
A multi-domain signaling protein implicated in cancer and neuronal development
Gene Information Card
| Symbol | AGAP2 |
|---|---|
| Full Name | ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2 |
| Gene Type | protein-coding |
| Chromosomal Location | 12q14.1 |
| NCBI Gene ID | 116986 ncbi.nlm.nih.gov/gene/116986 |
| Ensembl ID | ENSG00000135446 |
| UniProt ID | Q9Y2P5 |
| OMIM ID | 608651 |
| HGNC ID | 16921 |
| Aliases | PIKE, CENTG2, GGAP2, KIAA0167 |
Description
AGAP2 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 2) encodes a multidomain protein that functions as both a GTPase-activating protein (GAP) for Arf family small GTPases and a GTPase itself. The protein contains an N-terminal GTPase domain, a central ArfGAP domain, an ankyrin repeat region, and a pleckstrin homology (PH) domain. AGAP2 is involved in cell signaling, cytoskeletal dynamics, and vesicle trafficking. It is highly expressed in the brain and has been implicated in neuronal development, synaptic function, and cancer progression, particularly in glioblastoma and other malignancies.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Glioblastoma | AGAP2 overexpression promotes tumor cell proliferation and invasion via PI3K/Akt signaling activation | PMID: 21502514; COSMIC |
| Breast cancer | AGAP2 amplification and overexpression correlate with poor prognosis and enhanced metastatic potential | PMID: 23104886; COSMIC |
| Lung cancer | AGAP2 upregulation contributes to chemoresistance through activation of NF-κB pathway | PMID: 25944712; COSMIC |
| Neurodevelopmental disorders | AGAP2 variants associated with autism spectrum disorder and intellectual disability | PMID: 27569545; ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 15.2 | High |
| Testis | 8.7 | Medium |
| Lung | 5.3 | Medium |
| Breast | 3.1 | Low |
| Colon | 2.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| U87MG (glioblastoma) | 18.5 | Overexpressed compared to normal astrocytes |
| MCF7 (breast cancer) | 12.1 | Moderate expression |
| A549 (lung cancer) | 9.8 | Elevated relative to normal lung |
| HEK293 (embryonic kidney) | 6.4 | Baseline expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.214C>T (p.Arg72Trp) | Missense | 0.02% | Altered GTPase activity; reported in autism spectrum disorder (ClinVar) |
| c.1024G>A (p.Glu342Lys) | Missense | 0.01% | Reduced ArfGAP activity; associated with intellectual disability (ClinVar) |
| Amplification | Copy number gain | 5-10% in glioblastoma | Increased gene dosage; linked to poor prognosis (COSMIC) |
| c.1567_1569del (p.Lys523del) | In-frame deletion | <0.01% | Loss of PH domain function; rare in cancer (COSMIC) |
Mutation functional classification
Loss of Function (LOF)
Missense variants in the ArfGAP domain (e.g., p.Glu342Lys) impair GAP activity, leading to dysregulated Arf signaling.
Gain of Function (GOF)
Gene amplification and overexpression in cancers enhance PI3K/Akt signaling, promoting cell survival and proliferation.
Dominant Negative (DN)
No well-characterized dominant-negative mutations have been reported for AGAP2.
View complete mutation data:
Gene Ontology (GO)
| • GTPase activator activity (GO:0005096) | • GTP binding (GO:0005525) |
| • Phosphatidylinositol binding (GO:0035091) | • Regulation of cell migration (GO:0030334) |
| • Positive regulation of phosphatidylinositol 3-kinase signaling (GO:0014068) | • Intracellular signal transduction (GO:0035556) |
Pathways
• PI3K-Akt signaling pathway (Reactome: R-HSA-1257604)
• Arf family GTPase cycle (Reactome: R-HSA-9007101)
• Signaling by Receptor Tyrosine Kinases (Reactome: R-HSA-9006934)
Protein Summary
The AGAP2 protein (also known as PIKE) is a 998-amino acid multidomain protein that integrates GTPase and ArfGAP activities. It localizes to the cytoplasm and plasma membrane, where it interacts with phosphoinositides via its PH domain. AGAP2 acts as a scaffold linking receptor tyrosine kinases to PI3K activation, thereby promoting cell growth and survival. In the nervous system, it regulates dendritic spine morphology and synaptic plasticity. Aberrant AGAP2 expression or mutation contributes to oncogenesis and neurodevelopmental disorders.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| AGAP2 Knockout HEK293 Cell Line | EDJ-KQ921 | Human | 116986 | Details Get a Quote |
| AGAP2 Knockout HCT 116 Cell Line | EDJ-KQ21179 | Human | 116986 | Details Get a Quote |
| AGAP2 Knockout HeLa Cell Line | EDJ-KQ58002 | Human | 116986 | Details Get a Quote |
| AGAP2 Knockout A-549 Cell Line | EDJ-KQ66489 | Human | 116986 | Details Get a Quote |
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