ABCA4

ATP Binding Cassette Subfamily A Member 4: Key Retinal Transporter and Stargardt Disease Gene

Gene Information Card

Symbol ABCA4
Full Name ATP Binding Cassette Subfamily A Member 4
Gene Type protein-coding
Chromosomal Location 1p22.1
NCBI Gene ID 24 ncbi.nlm.nih.gov/gene/24
Ensembl ID ENSG00000198691
UniProt ID P78363
OMIM ID 601691
HGNC ID 34
Aliases ABCR, ABC10, CORD3, FFM, RMP, RP19, STGD1

Description

ABCA4 encodes the ATP-binding cassette transporter ABCA4 (also known as ABCR), predominantly expressed in retinal photoreceptor outer segments. It functions as a flippase for N-retinylidene-phosphatidylethanolamine (N-Ret-PE), facilitating the clearance of all-trans-retinal and preventing toxic bisretinoid accumulation. Loss-of-function mutations lead to lipofuscin deposition in retinal pigment epithelium, causing progressive vision loss. Over 1,000 pathogenic variants are associated with autosomal recessive Stargardt disease, cone-rod dystrophy, and retinitis pigmentosa.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Stargardt disease 1 (STGD1) Impaired N-Ret-PE transport leads to A2E accumulation and RPE toxicity ClinVar, OMIM
Cone-rod dystrophy 3 (CORD3) Severe ABCA4 dysfunction disrupts cone and rod survival ClinVar, OMIM
Retinitis pigmentosa 19 (RP19) Biallelic null variants cause early-onset rod-cone degeneration ClinVar, OMIM
Fundus flavimaculatus Phenotypic variant of STGD1 with fleck-like deposits OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Retina 56.2 High
Testis 2.1 Low
Brain (cerebellum) 0.8 Not detected
Liver 0.3 Not detected
Heart 0.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
ARPE-19 (retinal pigment epithelium) 12.5 Moderate expression
HEK293 (embryonic kidney) 0.4 Low/background
SH-SY5Y (neuroblastoma) 0.2 Not detected
HepG2 (liver) 0.1 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.5882G>A (p.Gly1961Glu) Missense ~10% in STGD1 cohorts Partial loss of ATPase activity; common in European populations
c.2588G>C (p.Gly863Ala) Missense ~5% Reduced substrate transport; mild phenotype
c.5461-10T>C Splice ~3% Exon skipping; frameshift; severe STGD1
c.5714+5G>A Splice ~2% Aberrant splicing; null allele; RP19
c.4462G>A (p.Gly1488Glu) Missense ~1% Severe reduction in N-Ret-PE flippase activity
Mutation functional classification

Loss of Function (LOF)

Most ABCA4 mutations are loss-of-function, impairing N-Ret-PE transport and leading to toxic bisretinoid accumulation in RPE. Null alleles cause severe early-onset retinitis pigmentosa.

Gain of Function (GOF)

No gain-of-function mutations reported for ABCA4.

Dominant Negative (DN)

No dominant-negative mechanism established; all disease-associated variants are recessive.

Gene Ontology (GO)

• ATP binding • ATP hydrolysis activity
• phospholipid transporter activity • retinoid binding
• photoreceptor outer segment membrane • visual perception
• response to light stimulus • lipid transport

Pathways

Retinoid cycle (visual cycle)
ATP-binding cassette (ABC) transporters
Phospholipid transport in photoreceptors

Protein Summary

ABCA4 is a 2,273-amino acid transmembrane protein with two nucleotide-binding domains (NBDs) and two transmembrane domains (TMDs). It localizes to the rims of photoreceptor outer segment discs. The protein uses ATP hydrolysis to flip N-retinylidene-PE from the lumenal to the cytoplasmic leaflet, enabling all-trans-retinal reduction and recycling. Structural studies reveal a 'lumenal gate' that opens upon substrate binding. Mutations disrupting NBD ATPase or substrate recognition cause retinal degeneration.

Related Products

Product name Cat.No. Species Gene ID
ABCA4 Knockout HEK293 Cell Line EDJ-KQ1043 Human 24 Details Get a Quote
ABCA4 Knockout HeLa Cell Line EDJ-KQ18293 Human 24 Details Get a Quote
ABCA4 Knockout A-549 Cell Line EDJ-KQ61014 Human 24 Details Get a Quote
ABCA4 Knockout HCT 116 Cell Line EDJ-KQ69488 Human 24 Details Get a Quote
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