ABCA4
ATP Binding Cassette Subfamily A Member 4: Key Retinal Transporter and Stargardt Disease Gene
Gene Information Card
| Symbol | ABCA4 |
|---|---|
| Full Name | ATP Binding Cassette Subfamily A Member 4 |
| Gene Type | protein-coding |
| Chromosomal Location | 1p22.1 |
| NCBI Gene ID | 24 ncbi.nlm.nih.gov/gene/24 |
| Ensembl ID | ENSG00000198691 |
| UniProt ID | P78363 |
| OMIM ID | 601691 |
| HGNC ID | 34 |
| Aliases | ABCR, ABC10, CORD3, FFM, RMP, RP19, STGD1 |
Description
ABCA4 encodes the ATP-binding cassette transporter ABCA4 (also known as ABCR), predominantly expressed in retinal photoreceptor outer segments. It functions as a flippase for N-retinylidene-phosphatidylethanolamine (N-Ret-PE), facilitating the clearance of all-trans-retinal and preventing toxic bisretinoid accumulation. Loss-of-function mutations lead to lipofuscin deposition in retinal pigment epithelium, causing progressive vision loss. Over 1,000 pathogenic variants are associated with autosomal recessive Stargardt disease, cone-rod dystrophy, and retinitis pigmentosa.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Stargardt disease 1 (STGD1) | Impaired N-Ret-PE transport leads to A2E accumulation and RPE toxicity | ClinVar, OMIM |
| Cone-rod dystrophy 3 (CORD3) | Severe ABCA4 dysfunction disrupts cone and rod survival | ClinVar, OMIM |
| Retinitis pigmentosa 19 (RP19) | Biallelic null variants cause early-onset rod-cone degeneration | ClinVar, OMIM |
| Fundus flavimaculatus | Phenotypic variant of STGD1 with fleck-like deposits | OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Retina | 56.2 | High |
| Testis | 2.1 | Low |
| Brain (cerebellum) | 0.8 | Not detected |
| Liver | 0.3 | Not detected |
| Heart | 0.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| ARPE-19 (retinal pigment epithelium) | 12.5 | Moderate expression |
| HEK293 (embryonic kidney) | 0.4 | Low/background |
| SH-SY5Y (neuroblastoma) | 0.2 | Not detected |
| HepG2 (liver) | 0.1 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.5882G>A (p.Gly1961Glu) | Missense | ~10% in STGD1 cohorts | Partial loss of ATPase activity; common in European populations |
| c.2588G>C (p.Gly863Ala) | Missense | ~5% | Reduced substrate transport; mild phenotype |
| c.5461-10T>C | Splice | ~3% | Exon skipping; frameshift; severe STGD1 |
| c.5714+5G>A | Splice | ~2% | Aberrant splicing; null allele; RP19 |
| c.4462G>A (p.Gly1488Glu) | Missense | ~1% | Severe reduction in N-Ret-PE flippase activity |
Mutation functional classification
Loss of Function (LOF)
Most ABCA4 mutations are loss-of-function, impairing N-Ret-PE transport and leading to toxic bisretinoid accumulation in RPE. Null alleles cause severe early-onset retinitis pigmentosa.
Gain of Function (GOF)
No gain-of-function mutations reported for ABCA4.
Dominant Negative (DN)
No dominant-negative mechanism established; all disease-associated variants are recessive.
View complete mutation data:
Gene Ontology (GO)
| • ATP binding | • ATP hydrolysis activity |
| • phospholipid transporter activity | • retinoid binding |
| • photoreceptor outer segment membrane | • visual perception |
| • response to light stimulus | • lipid transport |
Pathways
• Retinoid cycle (visual cycle)
• ATP-binding cassette (ABC) transporters
• Phospholipid transport in photoreceptors
Protein Summary
ABCA4 is a 2,273-amino acid transmembrane protein with two nucleotide-binding domains (NBDs) and two transmembrane domains (TMDs). It localizes to the rims of photoreceptor outer segment discs. The protein uses ATP hydrolysis to flip N-retinylidene-PE from the lumenal to the cytoplasmic leaflet, enabling all-trans-retinal reduction and recycling. Structural studies reveal a 'lumenal gate' that opens upon substrate binding. Mutations disrupting NBD ATPase or substrate recognition cause retinal degeneration.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ABCA4 Knockout HEK293 Cell Line | EDJ-KQ1043 | Human | 24 | Details Get a Quote |
| ABCA4 Knockout HeLa Cell Line | EDJ-KQ18293 | Human | 24 | Details Get a Quote |
| ABCA4 Knockout A-549 Cell Line | EDJ-KQ61014 | Human | 24 | Details Get a Quote |
| ABCA4 Knockout HCT 116 Cell Line | EDJ-KQ69488 | Human | 24 | Details Get a Quote |
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