Epiphyseal Chondrodysplasia, Miura Type (ECDM) Cell Models for Research
Disease Burden and Research Significance
Epiphyseal Chondrodysplasia Miura Type (ECDM) is an ultra-rare genetic skeletal disorder. The exact prevalence is unknown, but fewer than 50 cases have been reported worldwide. It is caused by heterozygous mutations in the TRPV4 gene. Clinically, ECDM presents with short stature, brachydactyly, and epiphyseal abnormalities. There is no cure, and management is symptomatic. The rarity of the disease limits large-scale epidemiological studies, but the condition is included in the Online Mendelian Inheritance in Man (OMIM) database (#618975).
ECDM provides a unique opportunity to study the role of TRPV4 in skeletal development and chondrocyte function. TRPV4 is a calcium-permeable ion channel involved in mechanotransduction and osmoregulation. Understanding the molecular mechanisms of ECDM can shed light on related skeletal dysplasias and potential therapeutic targets. Public datasets, such as those from the Genotype-Tissue Expression (GTEx) project, provide expression data for TRPV4 in various tissues, including cartilage. Open questions include the precise signaling pathways downstream of TRPV4 mutations and the development of targeted therapies.
Core Molecular Pathogenesis
Although ECDM is not a cancer, the molecular pathways involved are relevant to cell signaling and growth. The primary pathway is the TRPV4-mediated calcium signaling pathway. Mutations in TRPV4 can lead to gain-of-function or loss-of-function effects, altering calcium influx and downstream signaling. Key steps include:
1. TRPV4 channel activation by mechanical or chemical stimuli.
2. Calcium influx into the cell.
3. Activation of calcium-dependent signaling cascades, such as the calcineurin/NFAT pathway.
4. Regulation of gene expression involved in chondrocyte differentiation and proliferation.
Dysregulation of these steps can lead to abnormal skeletal development.
The primary genetic alterations in ECDM are heterozygous missense mutations in the TRPV4 gene. According to ClinVar and the literature, common mutations include p.Arg594His, p.Arg616Gln, and p.Arg618Gly. These mutations are located in the ankyrin repeat domain or the channel pore region. The frequency of these mutations is not well established due to the rarity of the disease, but they are consistently reported in affected individuals. The functional effect is typically a gain-of-function, leading to increased calcium influx and altered chondrocyte function.
| Gene | Frequency (%) | Mutation Type | Functional Effect |
|---|---|---|---|
| TRPV4 | ~100% in reported cases | Missense | Gain-of-function, increased calcium influx |
TRPV4 mutations in ECDM affect several signaling networks:
- • Calcium signaling: Increased intracellular calcium activates calmodulin and calcineurin, leading to NFAT translocation to the nucleus and altered gene expression.
- • MAPK pathway: Calcium can activate MAPK cascades, influencing cell proliferation and differentiation.
- • PI3K/AKT pathway: Calcium signaling can crosstalk with PI3K/AKT, affecting cell survival and growth.
- • Hedgehog and Wnt pathways: These pathways are crucial for chondrocyte development and may be modulated by calcium signaling.
Key nodes include TRPV4, calmodulin, calcineurin, NFAT, and downstream transcription factors.
Experimental Model Systems
Common cell lines used for studying skeletal dysplasias include chondrocyte cell lines such as ATDC5 and C28/I2. However, these are not derived from ECDM patients. For ECDM-specific research, induced pluripotent stem cells (iPSCs) derived from patients can be differentiated into chondrocytes. Organoids are also emerging as three-dimensional models that recapitulate cartilage development.
| Cell Line | Origin | Key Mutations |
|---|---|---|
| ATDC5 | Mouse teratocarcinoma | None (wild-type) |
| C28/I2 | Human juvenile costal chondrocyte | None (wild-type) |
| Patient-derived iPSC | Human | TRPV4 mutation (e.g., p.Arg594His) |
Animal models for ECDM are limited, but transgenic mice carrying TRPV4 mutations have been generated. These include:
- • Knock-in mice with the p.Arg594His mutation, which recapitulate the skeletal phenotype.
- • Zebrafish models with trpv4 knockdown or mutation, used for developmental studies.
- • Chick embryos for overexpression studies.
These models are valuable for studying disease mechanisms and testing therapeutic interventions.
CRISPR-based gene editing enables the creation of isogenic cell lines with specific TRPV4 mutations. For example, a knock-in cell line with the p.Arg594His mutation can be generated in a wild-type chondrocyte cell line (e.g., C28/I2) to model the disease. Conversely, a knockout cell line can be created to study loss-of-function effects. These models are commercially available from various sources and are sequence-verified to ensure accuracy. They are essential for studying the functional consequences of specific mutations and for drug screening.
Related Disease
| Disease name | Disease type |
|---|
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| Product name | Cat.No. | Species | Gene ID | |
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| SMARCA1 Knockout Huh-7 Cell Line | EDJ-KQ45 | Human | 6594 | Details Get a Quote |
| CREB1 Knockout HEK293 Cell Line | EDJ-KQ781 | Human | 1385 | Details Get a Quote |
| GLI1 Knockout HEK293 Cell Line | EDJ-KQ896 | Human | 2735 | Details Get a Quote |
| PIK3C2A Knockout HEK293 Cell Line | EDJ-KQ1678 | Human | 5286 | Details Get a Quote |
| F2 Knockout HEK293 Cell Line | EDJ-KQ1714 | Human | 2147 | Details Get a Quote |
| TNNI3 Knockout HEK293 Cell Line | EDJ-KQ1813 | Human | 7137 | Details Get a Quote |
| NPR2 Knockout HEK293 Cell Line | EDJ-KQ1840 | Human | 4882 | Details Get a Quote |
| SLC6A7 Knockout HEK293 Cell Line | EDJ-KQ3044 | Human | 6534 | Details Get a Quote |
| GAST Knockout HEK293 Cell Line | EDJ-KQ3752 | Human | 2520 | Details Get a Quote |
| SMARCA1 Knockout HEK293 Cell Line | EDJ-KQ5054 | Human | 6594 | Details Get a Quote |
| SIAE Knockout HEK293 Cell Line | EDJ-KQ11409 | Human | 54414 | Details Get a Quote |
| TBL1X Knockout HEK293 Cell Line | EDJ-KQ12211 | Human | 6907 | Details Get a Quote |
| PIK3C2A Knockout HCT 116 Cell Line | EDJ-KQ20112 | Human | 5286 | Details Get a Quote |
| SMARCA1 Knockout A-549 Cell Line | EDJ-KQ29216 | Human | 6594 | Details Get a Quote |
| TBL1X Knockout A-549 Cell Line | EDJ-KQ40950 | Human | 6907 | Details Get a Quote |
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Applications of Gene-Edited Cells
Gene-edited cell lines are used to validate the functional impact of TRPV4 mutations. For example, a knock-in cell line with a gain-of-function mutation can be compared to the wild-type to assess changes in calcium influx, gene expression, and chondrocyte differentiation. Knockout lines can reveal the necessity of TRPV4 for normal chondrocyte function. These models help identify downstream targets and pathways.
Isogenic pairs (wild-type vs. mutant) are powerful tools for drug screening. They can be used to identify compounds that modulate TRPV4 activity, either by inhibiting the hyperactive channel or by restoring normal function. High-throughput screening can be performed to discover potential therapeutic agents. Additionally, these models can be used to study drug resistance mechanisms if the mutation confers altered sensitivity to existing drugs.
CRISPR-based synthetic lethality screens can identify genes that, when silenced, are lethal only in the context of TRPV4 mutations. This can reveal novel therapeutic targets and biomarkers. For example, a screen in a TRPV4 mutant cell line might identify a kinase that is essential for mutant cell survival but not for wild-type cells, providing a potential drug target.
Public Data Resources
| Database | URL | Description |
|---|---|---|
| TCGA | https://www.cancer.gov/tcga | The Cancer Genome Atlas, provides genomic data for various cancers (not directly for ECDM but useful for TRPV4 expression in other tissues). |
| cBioPortal | https://www.cbioportal.org/ | Visualization and analysis of cancer genomics data, including TRPV4 alterations. |
| DepMap | https://depmap.org/portal/ | Dependency Map, provides CRISPR screen data and gene dependency information for cancer cell lines. |
| GEO | https://www.ncbi.nlm.nih.gov/geo/ | Gene Expression Omnibus, repository for gene expression datasets, including those related to skeletal development. |
| ClinVar | https://www.ncbi.nlm.nih.gov/clinvar/ | Database of clinically relevant genetic variants, including TRPV4 mutations. |