Flash-KI Platform

High‑Efficiency Targeted Integration Platform (FLASH‑KI): Precise Writing, Unprecedented Efficiency

Gene knock-in (KI) is a critical technology for endogenous gene fluorescent tagging, reporter gene insertion, and site-directed mutagenesis. It is widely used in dynamic protein tracking, cell line development, disease modeling, and drug screening. However, conventional KI methods rely on Homology-Directed Repair (HDR), which notoriously suffers from extremely low efficiency in most cell types, high cytotoxicity, and prolonged screening cycles—making it the primary bottleneck in cell model generation.

To address these pain points, EDITGENE has developed the FLASH-KI technology platform, integrating two core technologies: a high-efficiency delivery system and cellular repair pathway modulation. By combining precision editing components with transient efficiency-enhancing strategies, FLASH-KI achieves highly efficient, low-toxicity, and selection-free precise knock-in across a variety of hard-to-transfect cells (e.g., hESCs, iPSCs) and complex genomic loci.

Service Advantages

Core Technology 1: FLASH-KI Delivery System

Conventional knock-in strategies typically require separate delivery of Cas9 protein, sgRNA, and Donor templates, resulting in cumbersome procedures and limited efficiency. EDITGENE’s proprietary FLASH-KI delivery vector enables the simultaneous delivery of the RNP complex and Donor DNA, significantly streamlining the workflow and boosting synergistic efficiency.

Technical Advantages
Co-delivery Design
Co‑delivery Design
Synchronized entry of RNPs and Donor DNA into the cell enhances the spatiotemporal matching of the repair template with the editing site.
Low Cytotoxicity
Low Cytotoxicity
The protein-based delivery approach avoids immunogenicity and random integration risks associated with DNA plasmids.
Broad Applicability
Broad Applicability
Validated in over 400 cell lines, including hard-to-transfect types like iPSCs, hESCs, and organoids.
Drug Selection-Free
Drug Selection-Free
Achieves high-purity cell pools without the need for enrichment across multiple validated targets.
Core Technology 2: NHEJ Inhibitor (KI Enhancer Drug)

During CRISPR-mediated DNA double-strand break repair, Non-Homologous End Joining (NHEJ) is the dominant repair pathway, while HDR efficiency is typically below 10%. EDITGENE has independently developed an NHEJ inhibitor that transiently and reversibly suppresses key NHEJ proteins during the editing process, forcing the cell to prioritize the HDR pathway.

Technical Advantages
Significant Efficiency Boost
Significant Efficiency Boost
Validated across multiple cell lines, increasing KI efficiency by 5-to-7-fold.
Reversible Inhibition
Reversible Inhibition
The drug's duration of action is controllable, ensuring no impact on long-term cell viability or function.
No Genetic Modification Required
No Genetic Modification Required
Independent of prior cell line modifications, making it universally applicable to any cell type.
High Compatibility
High Compatibility
Can be seamlessly integrated with FLASH-KI, electroporation, lipofection, and other delivery methods.
Service Advantages
FLASH‑KI vs. Conventional Methods
Technical Metric Conventional HDR (Plasmid/Electroporation) Conventional Electroporation (Donor Only) FLASH-KI (+ NHEJ Inhibitor) Improvement
293T GAPDH KI Efficiency ~10-15% 68% 88% 1.3x (vs. Electroporation)
5-8x (vs. Conv. HDR)
A9 T1R1 KI Efficiency <5% ~10-15% 46% 3-9x
hESC TH KI Efficiency <3% ~5% 20% 4-6x
Selection-Free High-Purity Pool No No Yes (Validated across multiple targets)
Cell Viability (24h Post-Transfection) 60‑70% 50‑60% >90% Significant Improvement
Note: Conventional HDR data is based on industry literature and internal validation; conventional electroporation data reflects empirical results from select cell lines; FLASH‑KI data is derived from EDITGENE internal testing.
Expected Performance Across Different Cell Types (FLASH-KI Platform)
Difficulty Level Representative Cell Lines Expected KI Efficiency (Pool) Project Success Rate (Homozygous Clones) Turnaround Time Key Influencing Factors
Low(Standard Immortalized) HEK293, HeLa, CHO, HCT-116 60-90% >90% 8-10 weeks Target locus, Donor design quality
⭐⭐ Medium(Hard-to-transfect, some suspension) A9, THP-1, K562, Jurkat 30-60% 70-80% 10‑12 weeks Cell state, transfection parameters, NHEJ inhibitor concentration
⭐⭐⭐ High (Stem cells, Primary, Organoids) iPSC, hESC, Primary T cells, Organoids 15-30% 60-70% 12-14 weeks Cell health, monoclonal formation efficiency
Definitions:
• Pool Efficiency: The proportion of cells with correct knock-in within the unselected post-transfection population (assessed via flow cytometry or sequencing).
• Project Success Rate: The percentage of projects that successfully deliver at least one homozygous monoclonal cell line.
Data is based on statistics from 100+ completed KI projects by EDITGENE.

Service Types

Standard KI
Standard KI
Monoclonal cell line + Sequencing validation
High-Purity Cell Pool
High-Purity Cell Pool
For easily transfected cells and housekeeping genes (e.g., GAPDH, ACTB), we directly deliver a cell pool with >80% positivity, saving time on monoclonal screening
Custom Hard-to-Transfect Cells
Custom Hard-to-Transfect Cells
Exclusive optimized protocols for hESCs, iPSCs, and primary cells to ensure the generation of clean, single-background positive monoclonal cells

Technical Workflow

Workflow

Application Cases

As of Q1 2026, the FLASH-KI platform has successfully delivered 20+ commercial projects covering immortalized cells, tumor cells, and stem cells, achieving precise integrations of fragments ranging from 0.5 to 5.5 kb. The overall project success rate is 98.6%, with a 100% success rate for fragments under 5500 bp.

Case 1: Precise KI of a High-Abundance Gene (HEK293T-GAPDH-EGFP)
Client Need

Insert an EGFP fluorescent tag (841 bp) at the C-terminus of the GAPDH gene in HEK293T cells for live-cell dynamic tracking, requiring a high-purity positive pool without drug selection.

Technical Breakthrough

Conventional electroporation yielded only 68% positivity with 30% cell death. FLASH-KI achieved:
① 88% positivity without antibiotic screening;
② >95% cell viability;
③ 40% improvement in fluorescence signal uniformity.

Timeline

Delivered an 88% positive polyclonal pool in 4 weeks; obtained homozygous KI monoclonal cell lines in 8 weeks (30% faster than the industry average).

Electroporation 68%
68% EGFP-KI in HEK293T cell pool by electroporation
Flash-KI 88%
88% EGFP-KI in HEK293T cell pool by Flash-KI
Case 2: Complete Gene KI at a Random Target (A-9-T1R1-CoGFP-Puro)
Client Need

Insert an EF1a-CoGFP-T2A-Puro cassette (2115 bp) into the T1R1 locus of A-9 cells while preserving native receptor conformation and signaling pathway integrity.

Technical Breakthrough

FLASH-KI achieved:
① 46% positivity without selection markers;
② >95% cell viability;
③ Monoclonal stability exceeding 15 passages.

Timeline

Functional polyclonal pool in 5 weeks; monoclonal screening and validation completed in 9 weeks.

0.2% without enhancer
0.2% EGFP‑KI in A9 cell pool by Flash‑KI without KI enhancer drug
46% with enhancer
46% EGFP‑KI in A9 cell pool by Flash‑KI with KI enhancer drug
Case 3: Human Embryonic Stem Cell Editing (hESC-H9-TH-P2A-EGFP)
Client Need

Insert a P2A-NeoR-EF1a-EGFP cassette (2283 bp) at the C-terminus of the TH gene in hESC-H9 cells, maintaining pluripotency and differentiation potential.

Technical Breakthrough

Overcame barriers for hard-to-transfect stem cells:
① 20% positivity without drug selection (industry average <5%);
② >90% cell viability;
③ Normal expression of Oct4/Sox2 pluripotency markers.

Timeline

20% positive polyclonal pool in 5 weeks; monoclonal identification completed in 11 weeks.

hESC KI 20%
20% NeoR‑EF1a‑EGFP‑KI in hESC cell pool by Flash‑KI with KI enhancer drug

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