ABCA1: ATP Binding Cassette Subfamily A Member 1

Cholesterol Efflux Transporter and Key Regulator of HDL Metabolism

Gene Information Card

Symbol ABCA1
Full Name ATP Binding Cassette Subfamily A Member 1
Gene Type Protein coding
Chromosomal Location 9q31.1
NCBI Gene ID 19 ncbi.nlm.nih.gov/gene/19
Ensembl ID ENSG00000165029
UniProt ID O95477
OMIM ID 600046
HGNC ID 29
Aliases ABC1, CERP, HDLDT1, TGD

Description

ABCA1 encodes a membrane-associated protein that belongs to the ATP-binding cassette (ABC) transporter superfamily. It functions as a cholesterol efflux pump, facilitating the transfer of cellular cholesterol and phospholipids to apolipoprotein A-I (apoA-I) to form high-density lipoprotein (HDL) particles. This gene is critical for reverse cholesterol transport and lipid homeostasis. Mutations in ABCA1 cause Tangier disease and familial hypoalphalipoproteinemia, characterized by severely reduced HDL levels and increased risk of cardiovascular disease.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Tangier disease Loss-of-function mutations impair cholesterol efflux, leading to accumulation of cholesterol in macrophages and tissues, very low HDL, and peripheral neuropathy. ClinVar, OMIM
Familial hypoalphalipoproteinemia Heterozygous mutations reduce ABCA1 activity, causing low HDL levels and increased atherosclerosis risk. ClinVar, OMIM
Coronary artery disease ABCA1 variants associated with altered HDL metabolism contribute to atherosclerosis. NCBI Gene, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 High
Small intestine 8.3 Medium
Adrenal gland 6.1 Medium
Lung 3.2 Low
Brain 1.8 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 10.2 Hepatocyte cell line
THP-1 7.5 Monocyte/macrophage line
Caco-2 5.9 Intestinal epithelial line
A549 2.1 Lung carcinoma line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.4429C>T (p.Arg1477Ter) Nonsense Rare Loss of function; associated with Tangier disease
c.5242C>T (p.Arg1748Ter) Nonsense Rare Loss of function; Tangier disease
c.4465G>A (p.Gly1489Arg) Missense Rare Impaired cholesterol efflux; familial hypoalphalipoproteinemia
Mutation functional classification

Loss of Function (LOF)

Most ABCA1 mutations are loss-of-function, reducing cholesterol efflux activity and leading to low HDL levels.

Gain of Function (GOF)

Not reported in ABCA1.

Dominant Negative (DN)

Some missense mutations may exert dominant-negative effects by interfering with wild-type ABCA1 function.

Gene Ontology (GO)

• ATP binding • ATPase activity
• cholesterol efflux • cholesterol transfer activity
• phospholipid efflux • plasma membrane
• high-density lipoprotein particle assembly • reverse cholesterol transport

Pathways

HDL metabolism
Reverse cholesterol transport
Lipid transport
ABC transporters

Protein Summary

ABCA1 is a 2261-amino acid transmembrane protein with two nucleotide-binding domains and two transmembrane domains. It mediates the active transport of cholesterol and phospholipids across the plasma membrane to lipid-poor apolipoproteins, primarily apoA-I, initiating HDL biogenesis. The protein is highly expressed in liver, intestine, and macrophages. Defects in ABCA1 lead to impaired HDL formation and lipid accumulation.

Related Products

Product name Cat.No. Species Gene ID
ABCA10 Knockout HEK293 Cell Line EDJ-KQ7017 Human 10349 Details Get a Quote
ABCA12 Knockout HEK293 Cell Line EDJ-KQ8436 Human 26154 Details Get a Quote
ABCA1 Knockout HEK293 Cell Line EDJ-KQ12244 Human 19 Details Get a Quote
ABCA13 Knockout HEK293 Cell Line EDJ-KQ12245 Human 154664 Details Get a Quote
ABCA1 Knockout A-549 Cell Line EDJ-KQ41017 Human 19 Details Get a Quote
ABCA1 Knockout HeLa Cell Line EDJ-KQ41018 Human 19 Details Get a Quote
ABCA1 Knockout ARPE-19 Cell Line EDJ-KZ293 Human 19 Details Get a Quote
ABCA1 Knockout THP-1 Cell Line EDJ-KZ519 Human 19 Details Get a Quote
ABCA1 Knockout U-87MG ATCC Cell Line EDJ-KZ520 Human 19 Details Get a Quote
ABCA10 Knockout HeLa Cell Line EDJ-KQ55388 Human 10349 Details Get a Quote
ABCA12 Knockout HeLa Cell Line EDJ-KQ55887 Human 26154 Details Get a Quote
ABCA13 Knockout HeLa Cell Line EDJ-KQ58741 Human 154664 Details Get a Quote
ABCA10 Knockout A-549 Cell Line EDJ-KQ63868 Human 10349 Details Get a Quote
ABCA12 Knockout A-549 Cell Line EDJ-KQ64378 Human 26154 Details Get a Quote
ABCA13 Knockout A-549 Cell Line EDJ-KQ67227 Human 154664 Details Get a Quote
Displaying Records 1 To 15 Of 21 Records
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