ABCA1: ATP Binding Cassette Subfamily A Member 1
Cholesterol Efflux Transporter and Key Regulator of HDL Metabolism
Gene Information Card
| Symbol | ABCA1 |
|---|---|
| Full Name | ATP Binding Cassette Subfamily A Member 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 9q31.1 |
| NCBI Gene ID | 19 ncbi.nlm.nih.gov/gene/19 |
| Ensembl ID | ENSG00000165029 |
| UniProt ID | O95477 |
| OMIM ID | 600046 |
| HGNC ID | 29 |
| Aliases | ABC1, CERP, HDLDT1, TGD |
Description
ABCA1 encodes a membrane-associated protein that belongs to the ATP-binding cassette (ABC) transporter superfamily. It functions as a cholesterol efflux pump, facilitating the transfer of cellular cholesterol and phospholipids to apolipoprotein A-I (apoA-I) to form high-density lipoprotein (HDL) particles. This gene is critical for reverse cholesterol transport and lipid homeostasis. Mutations in ABCA1 cause Tangier disease and familial hypoalphalipoproteinemia, characterized by severely reduced HDL levels and increased risk of cardiovascular disease.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Tangier disease | Loss-of-function mutations impair cholesterol efflux, leading to accumulation of cholesterol in macrophages and tissues, very low HDL, and peripheral neuropathy. | ClinVar, OMIM |
| Familial hypoalphalipoproteinemia | Heterozygous mutations reduce ABCA1 activity, causing low HDL levels and increased atherosclerosis risk. | ClinVar, OMIM |
| Coronary artery disease | ABCA1 variants associated with altered HDL metabolism contribute to atherosclerosis. | NCBI Gene, OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | High |
| Small intestine | 8.3 | Medium |
| Adrenal gland | 6.1 | Medium |
| Lung | 3.2 | Low |
| Brain | 1.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 10.2 | Hepatocyte cell line |
| THP-1 | 7.5 | Monocyte/macrophage line |
| Caco-2 | 5.9 | Intestinal epithelial line |
| A549 | 2.1 | Lung carcinoma line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.4429C>T (p.Arg1477Ter) | Nonsense | Rare | Loss of function; associated with Tangier disease |
| c.5242C>T (p.Arg1748Ter) | Nonsense | Rare | Loss of function; Tangier disease |
| c.4465G>A (p.Gly1489Arg) | Missense | Rare | Impaired cholesterol efflux; familial hypoalphalipoproteinemia |
Mutation functional classification
Loss of Function (LOF)
Most ABCA1 mutations are loss-of-function, reducing cholesterol efflux activity and leading to low HDL levels.
Gain of Function (GOF)
Not reported in ABCA1.
Dominant Negative (DN)
Some missense mutations may exert dominant-negative effects by interfering with wild-type ABCA1 function.
View complete mutation data:
Gene Ontology (GO)
| • ATP binding | • ATPase activity |
| • cholesterol efflux | • cholesterol transfer activity |
| • phospholipid efflux | • plasma membrane |
| • high-density lipoprotein particle assembly | • reverse cholesterol transport |
Pathways
• HDL metabolism
• Reverse cholesterol transport
• Lipid transport
• ABC transporters
Protein Summary
ABCA1 is a 2261-amino acid transmembrane protein with two nucleotide-binding domains and two transmembrane domains. It mediates the active transport of cholesterol and phospholipids across the plasma membrane to lipid-poor apolipoproteins, primarily apoA-I, initiating HDL biogenesis. The protein is highly expressed in liver, intestine, and macrophages. Defects in ABCA1 lead to impaired HDL formation and lipid accumulation.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ABCA10 Knockout HEK293 Cell Line | EDJ-KQ7017 | Human | 10349 | Details Get a Quote |
| ABCA12 Knockout HEK293 Cell Line | EDJ-KQ8436 | Human | 26154 | Details Get a Quote |
| ABCA1 Knockout HEK293 Cell Line | EDJ-KQ12244 | Human | 19 | Details Get a Quote |
| ABCA13 Knockout HEK293 Cell Line | EDJ-KQ12245 | Human | 154664 | Details Get a Quote |
| ABCA1 Knockout A-549 Cell Line | EDJ-KQ41017 | Human | 19 | Details Get a Quote |
| ABCA1 Knockout HeLa Cell Line | EDJ-KQ41018 | Human | 19 | Details Get a Quote |
| ABCA1 Knockout ARPE-19 Cell Line | EDJ-KZ293 | Human | 19 | Details Get a Quote |
| ABCA1 Knockout THP-1 Cell Line | EDJ-KZ519 | Human | 19 | Details Get a Quote |
| ABCA1 Knockout U-87MG ATCC Cell Line | EDJ-KZ520 | Human | 19 | Details Get a Quote |
| ABCA10 Knockout HeLa Cell Line | EDJ-KQ55388 | Human | 10349 | Details Get a Quote |
| ABCA12 Knockout HeLa Cell Line | EDJ-KQ55887 | Human | 26154 | Details Get a Quote |
| ABCA13 Knockout HeLa Cell Line | EDJ-KQ58741 | Human | 154664 | Details Get a Quote |
| ABCA10 Knockout A-549 Cell Line | EDJ-KQ63868 | Human | 10349 | Details Get a Quote |
| ABCA12 Knockout A-549 Cell Line | EDJ-KQ64378 | Human | 26154 | Details Get a Quote |
| ABCA13 Knockout A-549 Cell Line | EDJ-KQ67227 | Human | 154664 | Details Get a Quote |
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