NOTCH1 Gene: Structure, Function, and Clinical Significance
A comprehensive overview of the NOTCH1 gene, its protein product, associated diseases, expression patterns, and mutations.
Gene Information Card
| Symbol | NOTCH1 |
|---|---|
| Full Name | Notch receptor 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 9q34.3 |
| NCBI Gene ID | 4851 ncbi.nlm.nih.gov/gene/4851 |
| Ensembl ID | ENSG00000148400 |
| UniProt ID | P46531 |
| OMIM ID | 190198 |
| HGNC ID | 7881 |
| Aliases | TAN1, hN1, AOS5, AOVD1, CADASIL2, NSBAD |
Description
NOTCH1 encodes a member of the Notch family of transmembrane receptors. The protein is synthesized as a single precursor that is cleaved to form a heterodimer. Upon ligand binding, the receptor undergoes a series of proteolytic cleavages that release the intracellular domain (NICD), which translocates to the nucleus and regulates transcription. NOTCH1 signaling is critical for cell fate determination, proliferation, and apoptosis during development and adult tissue homeostasis. Mutations in NOTCH1 are associated with various cancers, particularly T-cell acute lymphoblastic leukemia (T-ALL), and developmental disorders such as Adams-Oliver syndrome and aortic valve disease.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| T-cell acute lymphoblastic leukemia (T-ALL) | Activating mutations in the heterodimerization domain or PEST domain lead to increased NOTCH1 signaling, promoting oncogenesis. | COSMIC; ClinVar; PMID: 15516921 |
| Aortic valve disease (bicuspid aortic valve, calcific aortic stenosis) | Loss-of-function mutations in NOTCH1 impair valve development and promote calcification. | OMIM #109730; PMID: 15863673 |
| Adams-Oliver syndrome | Heterozygous loss-of-function mutations cause vascular and limb defects. | OMIM #616028; PMID: 25557784 |
| CADASIL-like small vessel disease | Missense mutations in the EGF-like repeats lead to vascular smooth muscle cell degeneration. | OMIM #616779; PMID: 25557784 |
| Chronic lymphocytic leukemia (CLL) | Recurrent NOTCH1 mutations (mostly PEST domain) are associated with poor prognosis. | COSMIC; PMID: 21670405 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Heart | 8.9 | Medium |
| Brain | 6.2 | Low |
| Lung | 5.1 | Low |
| Liver | 4.3 | Low |
| Kidney | 7.0 | Medium |
| Spleen | 6.5 | Low |
| Thymus | 12.3 | High |
| Bone Marrow | 9.8 | Medium |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| K-562 (leukemia) | 10.5 | High expression |
| HeLa (cervical cancer) | 7.2 | Moderate |
| A549 (lung cancer) | 6.8 | Moderate |
| MCF7 (breast cancer) | 5.9 | Low |
| Jurkat (T-ALL) | 15.0 | Very high |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.4724T>C (p.Leu1575Pro) | Missense | Somatic in T-ALL | Activates NOTCH1 signaling |
| c.7328C>T (p.Pro2443Leu) | Missense | Germline in Adams-Oliver syndrome | Loss of function |
| c.6802C>T (p.Arg2268Cys) | Missense | Germline in CADASIL-like | Aberrant protein aggregation |
| c.7541_7542delCT (p.Pro2514fs) | Frameshift | Somatic in CLL | Truncated PEST domain, increased stability |
Mutation functional classification
Loss of Function (LOF)
Mutations that reduce or abolish NOTCH1 signaling, often due to truncation or missense changes in critical domains, leading to developmental defects or tumor suppression loss.
Gain of Function (GOF)
Mutations that enhance NOTCH1 signaling, typically in the heterodimerization domain or PEST domain, leading to increased NICD stability and oncogenic activity.
Dominant Negative (DN)
Mutations that produce a receptor that interferes with wild-type NOTCH1 function, often seen in some missense mutations affecting ligand binding or cleavage.
View complete mutation data:
Gene Ontology (GO)
| • Notch binding | • calcium ion binding |
| • receptor activity | • transcription factor activity |
| • RNA polymerase II distal enhancer sequence-specific binding | • cell fate determination |
| • positive regulation of transcription by RNA polymerase II | • negative regulation of transcription by RNA polymerase II |
| • cell differentiation | • apoptotic process |
| • angiogenesis |
Pathways
• Notch signaling pathway
• Signaling by NOTCH1
• Regulation of stem cell pluripotency
• T-cell receptor signaling pathway
• Hematopoietic cell lineage
Protein Summary
The NOTCH1 protein is a 2555-amino acid single-pass type I transmembrane receptor. It is synthesized as a 300 kDa precursor that is cleaved by furin into a 180 kDa N-terminal extracellular domain and a 120 kDa C-terminal transmembrane fragment, which remain non-covalently associated. The extracellular domain contains 36 EGF-like repeats and 3 LIN12/Notch repeats, while the intracellular domain includes a RAM domain, ankyrin repeats, a transactivation domain, and a PEST sequence. Ligand binding (e.g., Delta-like, Jagged) triggers two proteolytic cleavages (ADAM metalloprotease and gamma-secretase) that release the NICD, which translocates to the nucleus and forms a complex with RBPJ and MAML to activate transcription of target genes such as MYC and HES1.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NOTCH1 Knockout HEK293 Cell Line | EDJ-KQ435 | Human | 4851 | Details Get a Quote |
| NOTCH1 Knockout A-549 Cell Line | EDJ-KQ18001 | Human | 4851 | Details Get a Quote |
| NOTCH1 Knockout HeLa Cell Line | EDJ-KQ18299 | Human | 4851 | Details Get a Quote |
| NOTCH1 Knockout HCT 116 Cell Line | EDJ-KQ18733 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.D2185=) Point Mutation in HAP1 Cell Line | EDC03335 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.G1788S) Point Mutation in HAP1 Cell Line | EDC03336 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.D1698=) Point Mutation in HAP1 Cell Line | EDC03337 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.N755=) Point Mutation in HAP1 Cell Line | EDC03338 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.P668A) Point Mutation in HAP1 Cell Line | EDC03339 | Human | 4851 | Details Get a Quote |
| NOTCH1 (p.N104=) Point Mutation in HAP1 Cell Line | EDC03340 | Human | 4851 | Details Get a Quote |
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