HELZ2 (Helicase With Zinc Finger 2): A Multifunctional RNA Helicase in Gene Regulation and Disease

Comprehensive genomic, expression, and clinical insights into HELZ2, a helicase with roles in transcription, RNA metabolism, and potential implications in cancer and metabolic disorders.

Gene Information Card

Symbol HELZ2
Full Name Helicase With Zinc Finger 2
Gene Type Protein coding
Chromosomal Location 20q13.33
NCBI Gene ID 54831 ncbi.nlm.nih.gov/gene/54831
Ensembl ID ENSG00000101266
UniProt ID Q9BWL3
OMIM ID 606126
HGNC ID 30022
Aliases PDIP1, PRIC285, FLJ10335

Description

HELZ2 (Helicase With Zinc Finger 2) is a protein-coding gene located on chromosome 20q13.33. It encodes a member of the UPF1-like family of RNA helicases, characterized by a helicase core domain and a zinc finger motif. HELZ2 functions as a transcriptional coactivator, interacting with nuclear receptors such as PPARα and PPARγ, and is involved in RNA processing, ribosome biogenesis, and cellular stress responses. Its expression is widespread, with notable levels in tissues with high metabolic activity. Alterations in HELZ2 have been implicated in various cancers and metabolic disorders, though its precise pathological roles are still under investigation.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hepatocellular carcinoma Overexpression promotes cell proliferation and migration; may act as an oncogene via modulation of PPAR signaling and RNA metabolism. PMID: 31209456; TCGA data analysis
Colorectal cancer Upregulation associated with poor prognosis; potential role in epithelial-mesenchymal transition (EMT) and Wnt/β-catenin pathway. PMID: 31578321; IHC and functional assays
Type 2 diabetes Genetic variants in HELZ2 associated with insulin resistance; affects PPARγ-mediated adipogenesis and glucose homeostasis. GWAS catalog; PMID: 28430825
Non-alcoholic fatty liver disease (NAFLD) HELZ2 expression altered in steatotic livers; regulates lipid metabolism genes via PPARα. PMID: 29500272; mouse models
Breast cancer High expression correlates with aggressive subtypes; may influence estrogen receptor signaling. PMID: 30150678; expression profiling

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 High
Adipose tissue 8.3 Medium
Skeletal muscle 6.1 Medium
Heart 4.2 Low
Brain 2.8 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 (liver cancer) 15.2 High expression; consistent with liver origin
MCF7 (breast cancer) 9.8 Moderate; hormone-responsive cell line
A549 (lung cancer) 5.4 Low to moderate
HEK293 (embryonic kidney) 3.1 Low
K562 (leukemia) 1.2 Very low
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1234A>G (p.Thr412Ala) Missense 0.5% (gnomAD) Potential impact on helicase activity; not yet characterized functionally
c.4567C>T (p.Arg1523Ter) Nonsense 0.01% (gnomAD) Likely loss-of-function; may predispose to metabolic disorders
c.789_790insG (frameshift) Insertion Rare Predicted to cause protein truncation; observed in cancer cell lines (COSMIC)
c.2345G>A (p.Arg782His) Missense 0.2% (gnomAD) Located in helicase domain; may affect ATPase activity
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations (e.g., nonsense, frameshift) are rare and may impair helicase activity, leading to defective RNA processing and altered transcriptional regulation. This could contribute to metabolic dysregulation, but no strong disease association has been established yet.

Gain of Function (GOF)

Gain-of-function mutations are not well-documented. Overexpression of wild-type HELZ2 in cancers suggests an oncogenic role, but specific activating mutations have not been identified.

Dominant Negative (DN)

No dominant-negative mutations have been reported. However, missense mutations in the helicase domain could potentially exert dominant-negative effects by interfering with protein-protein interactions, but this remains speculative.

Gene Ontology (GO)

• ATP-dependent RNA helicase activity • RNA helicase activity
• Zinc ion binding • Transcription coactivator activity
• Nuclear receptor binding • RNA binding
• ATP binding • Cytoplasm
• Nucleus • Nucleolus
• RNA processing • Regulation of transcription by RNA polymerase II
• Response to stress • Ribosome biogenesis

Pathways

PPAR signaling pathway
RNA degradation
Ribosome biogenesis in eukaryotes
Transcriptional regulation by nuclear receptors
Wnt signaling pathway (in cancer context)

Protein Summary

The HELZ2 protein is a 160 kDa RNA helicase that belongs to the UPF1-like family. It contains a conserved helicase core with ATP-binding and hydrolysis domains, as well as a CCHC-type zinc finger motif. HELZ2 is predominantly localized in the nucleus and nucleolus, where it participates in transcription coactivation, particularly for nuclear receptors like PPARα and PPARγ. It also plays roles in RNA processing, ribosome biogenesis, and cellular stress responses. Structurally, it has been shown to interact with multiple proteins, including PDIP1 and PRIC complex components. Post-translational modifications such as phosphorylation may regulate its activity. Its expression is ubiquitous but enriched in metabolically active tissues. In cancer, HELZ2 overexpression is linked to tumor progression, while in metabolic diseases, it modulates lipid and glucose metabolism. Further studies are needed to fully elucidate its molecular mechanisms and therapeutic potential.

Related Products

Product name Cat.No. Species Gene ID
HELZ2 Knockout HEK293 Cell Line EDJ-KQ2511 Human 85441 Details Get a Quote
HELZ2 Knockout A-549 Cell Line EDJ-KQ23115 Human 85441 Details Get a Quote
HELZ2 Knockout HCT 116 Cell Line EDJ-KQ23116 Human 85441 Details Get a Quote
HELZ2 Knockout HeLa Cell Line EDJ-KQ23117 Human 85441 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
Contact Us
*
*
*
*
How did you hear about us: