HELZ2 (Helicase With Zinc Finger 2): A Multifunctional RNA Helicase in Gene Regulation and Disease
Comprehensive genomic, expression, and clinical insights into HELZ2, a helicase with roles in transcription, RNA metabolism, and potential implications in cancer and metabolic disorders.
Gene Information Card
| Symbol | HELZ2 |
|---|---|
| Full Name | Helicase With Zinc Finger 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 20q13.33 |
| NCBI Gene ID | 54831 ncbi.nlm.nih.gov/gene/54831 |
| Ensembl ID | ENSG00000101266 |
| UniProt ID | Q9BWL3 |
| OMIM ID | 606126 |
| HGNC ID | 30022 |
| Aliases | PDIP1, PRIC285, FLJ10335 |
Description
HELZ2 (Helicase With Zinc Finger 2) is a protein-coding gene located on chromosome 20q13.33. It encodes a member of the UPF1-like family of RNA helicases, characterized by a helicase core domain and a zinc finger motif. HELZ2 functions as a transcriptional coactivator, interacting with nuclear receptors such as PPARα and PPARγ, and is involved in RNA processing, ribosome biogenesis, and cellular stress responses. Its expression is widespread, with notable levels in tissues with high metabolic activity. Alterations in HELZ2 have been implicated in various cancers and metabolic disorders, though its precise pathological roles are still under investigation.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hepatocellular carcinoma | Overexpression promotes cell proliferation and migration; may act as an oncogene via modulation of PPAR signaling and RNA metabolism. | PMID: 31209456; TCGA data analysis |
| Colorectal cancer | Upregulation associated with poor prognosis; potential role in epithelial-mesenchymal transition (EMT) and Wnt/β-catenin pathway. | PMID: 31578321; IHC and functional assays |
| Type 2 diabetes | Genetic variants in HELZ2 associated with insulin resistance; affects PPARγ-mediated adipogenesis and glucose homeostasis. | GWAS catalog; PMID: 28430825 |
| Non-alcoholic fatty liver disease (NAFLD) | HELZ2 expression altered in steatotic livers; regulates lipid metabolism genes via PPARα. | PMID: 29500272; mouse models |
| Breast cancer | High expression correlates with aggressive subtypes; may influence estrogen receptor signaling. | PMID: 30150678; expression profiling |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | High |
| Adipose tissue | 8.3 | Medium |
| Skeletal muscle | 6.1 | Medium |
| Heart | 4.2 | Low |
| Brain | 2.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 (liver cancer) | 15.2 | High expression; consistent with liver origin |
| MCF7 (breast cancer) | 9.8 | Moderate; hormone-responsive cell line |
| A549 (lung cancer) | 5.4 | Low to moderate |
| HEK293 (embryonic kidney) | 3.1 | Low |
| K562 (leukemia) | 1.2 | Very low |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234A>G (p.Thr412Ala) | Missense | 0.5% (gnomAD) | Potential impact on helicase activity; not yet characterized functionally |
| c.4567C>T (p.Arg1523Ter) | Nonsense | 0.01% (gnomAD) | Likely loss-of-function; may predispose to metabolic disorders |
| c.789_790insG (frameshift) | Insertion | Rare | Predicted to cause protein truncation; observed in cancer cell lines (COSMIC) |
| c.2345G>A (p.Arg782His) | Missense | 0.2% (gnomAD) | Located in helicase domain; may affect ATPase activity |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations (e.g., nonsense, frameshift) are rare and may impair helicase activity, leading to defective RNA processing and altered transcriptional regulation. This could contribute to metabolic dysregulation, but no strong disease association has been established yet.
Gain of Function (GOF)
Gain-of-function mutations are not well-documented. Overexpression of wild-type HELZ2 in cancers suggests an oncogenic role, but specific activating mutations have not been identified.
Dominant Negative (DN)
No dominant-negative mutations have been reported. However, missense mutations in the helicase domain could potentially exert dominant-negative effects by interfering with protein-protein interactions, but this remains speculative.
View complete mutation data:
Gene Ontology (GO)
| • ATP-dependent RNA helicase activity | • RNA helicase activity |
| • Zinc ion binding | • Transcription coactivator activity |
| • Nuclear receptor binding | • RNA binding |
| • ATP binding | • Cytoplasm |
| • Nucleus | • Nucleolus |
| • RNA processing | • Regulation of transcription by RNA polymerase II |
| • Response to stress | • Ribosome biogenesis |
Pathways
• PPAR signaling pathway
• RNA degradation
• Ribosome biogenesis in eukaryotes
• Transcriptional regulation by nuclear receptors
• Wnt signaling pathway (in cancer context)
Protein Summary
The HELZ2 protein is a 160 kDa RNA helicase that belongs to the UPF1-like family. It contains a conserved helicase core with ATP-binding and hydrolysis domains, as well as a CCHC-type zinc finger motif. HELZ2 is predominantly localized in the nucleus and nucleolus, where it participates in transcription coactivation, particularly for nuclear receptors like PPARα and PPARγ. It also plays roles in RNA processing, ribosome biogenesis, and cellular stress responses. Structurally, it has been shown to interact with multiple proteins, including PDIP1 and PRIC complex components. Post-translational modifications such as phosphorylation may regulate its activity. Its expression is ubiquitous but enriched in metabolically active tissues. In cancer, HELZ2 overexpression is linked to tumor progression, while in metabolic diseases, it modulates lipid and glucose metabolism. Further studies are needed to fully elucidate its molecular mechanisms and therapeutic potential.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| HELZ2 Knockout HEK293 Cell Line | EDJ-KQ2511 | Human | 85441 | Details Get a Quote |
| HELZ2 Knockout A-549 Cell Line | EDJ-KQ23115 | Human | 85441 | Details Get a Quote |
| HELZ2 Knockout HCT 116 Cell Line | EDJ-KQ23116 | Human | 85441 | Details Get a Quote |
| HELZ2 Knockout HeLa Cell Line | EDJ-KQ23117 | Human | 85441 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records