SIRT3 Knockout HEK293 Cell Line
Cat.No.:
EDC90414
Species:
Human
Cell Name:
HEK293
Gene:
SIRT3
Gene ID:
23410
Size:
1×10⁶cells
SIRT3 Knockout Cell Line (HEK293) is an exclusive upgraded CRISPR/Cas9 system-mediated gene knockout cell, with the advantages of Optimized Strategy Design, Efficient Cell Transfection, High-Performance Cas9 Protein and Hassle-Free Cell Selection.
| Cat.No. | EDC90414 |
|---|---|
| Product Name | SIRT3 Knockout Cell Line (HEK293) |
| Cell Line | HEK293 |
| Cellosaurus ID | CVCL_0045 |
| Cell Line Synonyms | Hek293, HEK-293, HEK/293, (HEK)293, HEK 293, HEK,293, 293, 293 HEK, 293 Ad5, Graham 293, Graham-293, Human Embryonic Kidney 293 |
| Gene | SIRT3 |
| NCBI Gene ID | |
| Gene Synonyms | SIR2L3 |
| Summary |
SIRT3 encodes a member of the sirtuin family of class III histone deacetylases, homologs to the yeast Sir2 protein. The encoded protein is found exclusively in mitochondria, where it can eliminate reactive oxygen species, inhibit apoptosis, and prevent the formation of cancer cells. SIRT3 has far-reaching effects on nuclear gene expression, cancer, cardiovascular disease, neuroprotection, aging, and metabolic control. [provided by RefSeq, May 2019]
|
| Associated Diseases | Non-tumor |
| Morphology | Adherent |
| Passage Ratio | 1/5,2days |
| Complete Culture Medium | DMEM + 10% FBS |
| Freezing Medium | 95% Complete culture medium+ 5% DMSO |
| QC | Indels validated by Sanger sequencing; sterility confirmed via microbial testing. |
* For research use only. Not intended for use in humans or animals, including clinical, therapeutic, or diagnostic purposes.
| Loci | STR Info (Sample Cell) Sample Cell Line: HEK293 | STR Info (Cell bank) Cell Line: HEK293 | ||
| Allele1 | Allele2 | Allele1 | Allele2 | |
| Amelogenin | X | X | ||
| CSF1P0 | 12 | 11 | 12 | |
| D2S1338 | 19 | 19 | ||
| D3S1358 | 15 | 17 | 15 | 17 |
| D5S818 | 8 | 8 | 9 | |
| D7S820 | 11 | 12 | 11 | 12 |
| D8S1179 | 12 | 14 | 12 | 14 |
| D13S317 | 12 | 14 | 12 | 14 |
| D16S539 | 9 | 13 | 9 | 13 |
| D18S51 | 17 | 18 | 17 | 18 |
| D19S433 | 15 | 18 | 15 | 18 |
| D21S11 | 28 | 30.2 | 28 | 30.2 |
| FGA | 23 | 23 | ||
| Penta D | 9 | 10 | 9 | 10 |
| Penta E | 7 | 15 | 7 | 15 |
| TH01 | 7 | 9.3 | 7 | 9.3 |
| TPOX | 11 | 11 | ||
| vWA | 16 | 19 | 16 | 19 |
| D6S1043 | 11 | 11 | ||
| D12S391 | 19 | 21 | 11 | 15 |
| D2S441 | 11 | 15 | 11 | 15 |
* STR authentication data of this cell line matches with that of cell lines sourced from ATCC, DSMZ, JCRB, and RIKEN databases.
Conclusion: The STR identification of this cell is correct.
Conclusion: The STR identification of this cell is correct.
FAQ
Which is better for studying SIRT3 function, SIRT3 Knockout HEK293 Cell Line or SIRT3 overexpression HEK293 Cell Line?
The choice depends on whether you are studying SIRT3's role as the principal mitochondrial NAD⁺-dependent deacetylase or its functions in metabolic regulation, oxidative stress response, and aging biology. The Knockout line is the standard tool for asking whether SIRT3 is required for deacetylating mitochondrial substrates — SIRT3 regulates fatty acid oxidation (LCAD, HADHA), TCA cycle (IDH2, GDH), ETC components, and antioxidant defense (SOD2). Overexpression is useful for studying SIRT3 in metabolic stress and for testing therapeutic potential.
For mitochondrial sirtuin research, the EDITGENE SIRT3 Knockout in HEK293 is a workhorse mechanistic platform — HEK293 supports biochemical SIRT3 substrate characterization and structure-function studies. This product complements the parallel SIRT3 Knockout in HAP1 (also available); HEK293 is preferred for biochemistry, transfection-based reporter assays, and structure-function studies given its high transfection efficiency. Rescue with wild-type or catalytically-dead (H248Y) SIRT3 is the standard specificity control.
What are the application scenarios for this model?
Primary applications:
• Mitochondrial protein acetylation: lysine acetylation analysis of SIRT3 substrates (SOD2, IDH2, LCAD, HADHA) by Western blot or mass spectrometry.
• Mitochondrial bioenergetics: Seahorse OCR/ECAR analysis to assess respiratory chain function in the absence of SIRT3.
• Antioxidant defense: mitochondrial superoxide measurement (MitoSOX) and SOD2 activity assays given SIRT3-mediated SOD2 K68/K122 deacetylation.
• Structure-function studies: high-transfection-efficiency platform for systematic SIRT3 variant screening.
EDITGENE recommends this HEK293-based model for biochemical SIRT3 research and structure-function studies; the parallel SIRT3 Knockout in HAP1 is preferred for unbiased phenotypic screens.
Is this SIRT3 Knockout HEK293 Cell Line compatible with overexpression rescue experiments?
Yes. SIRT3 rescue experiments are well-established for mitochondrial deacetylase research:
• Construct design: use a codon-modified SIRT3 sequence with a small C-terminal tag (FLAG, HA). SIRT3 has an N-terminal mitochondrial targeting sequence that is cleaved upon import — N-terminal tags must not disrupt this processing.
• Catalytically-dead rescue: the H248Y mutation abolishes deacetylase activity and is the standard specificity control.
• Mitochondrial localization validation: confirm mitochondrial matrix localization by appropriate compartment markers.
• Functional readout: rescue should restore deacetylation of SIRT3 substrates and improve mitochondrial bioenergetics.
HEK293 transduces efficiently with lentivirus and supports stable rescue line generation.
* Research Use Disclaimer: Content is generated from publicly available research data, bioinformatic resources, and computational analyses for research reference only.
Related Publications
SIRT3-mediated deacetylation of NLRC4 promotes inflammasome activation.
IF=13.3
Theranostics
() infection of macrophage induces NLRC4 inflammasome-mediated production of the pro-inflammatory cytokines IL-1β. Post-translational modifications on NLRC4 are critical for its activation. Sirtuin3 (SIRT3) is the most thoroughly studied mitochondrial nicotinamide adenine dinucleotide (NAD) -dependent deacetylase. We wondered whether SIRT3 mediated-deacetylation could take part in NLRC4 inflammasome activation. We initially tested IL-1β production and pyroptosis after cytosolic transfection of flagellin or infection in wild type and SIRT3-deficient primary peritoneal macrophages via immunoblotting and ELISA assay. These results were confirmed in SIRT3-deficient immortalized bone marrow derived macrophages (iBMDMs) which were generated by CRISPR-Cas9 technology. In addition, experiments were conducted to confirm the role of SIRT3 in -induced cytokines production. Then NLRC4 assembly was analyzed by immune-fluorescence assay and ASC oligomerization assay. Immunoblotting, ELISA and flow cytometry were performed to clarify the role of SIRT3 in NLRP3 and AIM2 inflammasomes activation. To further investigate the mechanism of SIRT3 in NLRC4 activation, co-immunoprecipitation (Co-IP), we did immunoblot, cellular fractionation and in-vitro deacetylation assay. Finally, to clarify the acetylation sites of NLRC4, we performed liquid chromatography-mass spectrometry (LC-MS) and immunoblotting analysis. SIRT3 deficiency led to significantly impaired NLRC4 inflammasome activation and pyroptosis both and . Furthermore, SIRT3 promotes NLRC4 inflammasome assembly by inducing more ASC speck formation and ASC oligomerization. However, SIRT3 is dispensable for NLRP3 and AIM2 inflammasome activation. Moreover, SIRT3 interacts with and deacetylates NLRC4 to promote its activation. Finally, we proved that deacetylation of NLRC4 at Lys71 or Lys272 could promote its activation. Our study reveals that SIRT3 mediated-deacetylation of NLRC4 is pivotal for NLRC4 activation and the acetylation switch of NLRC4 may aid the clearance of infection.
SIRT3 consolidates heterochromatin and counteracts senescence.
IF=13.1
Nucleic acids research
Sirtuin 3 (SIRT3) is an NAD+-dependent deacetylase linked to a broad range of physiological and pathological processes, including aging and aging-related diseases. However, the role of SIRT3 in regulating human stem cell homeostasis remains unclear. Here we found that SIRT3 expression was downregulated in senescent human mesenchymal stem cells (hMSCs). CRISPR/Cas9-mediated depletion of SIRT3 led to compromised nuclear integrity, loss of heterochromatin and accelerated senescence in hMSCs. Further analysis indicated that SIRT3 interacted with nuclear envelope proteins and heterochromatin-associated proteins. SIRT3 deficiency resulted in the detachment of genomic lamina-associated domains (LADs) from the nuclear lamina, increased chromatin accessibility and aberrant repetitive sequence transcription. The re-introduction of SIRT3 rescued the disorganized heterochromatin and the senescence phenotypes. Taken together, our study reveals a novel role for SIRT3 in stabilizing heterochromatin and counteracting hMSC senescence, providing new potential therapeutic targets to ameliorate aging-related diseases.
SIRT3 (Sirtuin-3) Prevents Ang II (Angiotensin II)-Induced Macrophage Metabolic Switch Improving Perivascular Adipose Tissue Function.
IF=7.4
Arteriosclerosis, thrombosis, and vascular biology
OBJECTIVE:Infiltrated macrophages actively promote perivascular adipose tissue remodeling and represent a dominant population in the perivascular adipose tissue microenvironment of hypertensive mice. However, the role of macrophages in initiating metabolic inflammation remains uncertain. SIRT3 (sirtuin-3), a NAD-dependent deacetylase, is sensitive to metabolic status and mediates adaptation responses. In this study, we investigated the role of SIRT3-mediated metabolic shift in regulating NLRP3 (Nod-like receptor family pyrin domain-containing 3) inflammasome activation. Approach and Results: Here, we report that Ang II (angiotensin II) accelerates perivascular adipose tissue inflammation and fibrosis, accompanied by NLRP3 inflammasome activation and IL (interleukin)-1β secretion in myeloid SIRT3 knockout (SIRT3) mice. This effect is associated with adipose tissue mitochondrial dysfunction. In vitro studies indicate that the deletion of SIRT3 in bone marrow-derived macrophages induces IL-1β production by shifting the metabolic phenotype from oxidative phosphorylation to glycolysis. Mechanistically, SIRT3 deacetylates and activates PDHA1 (pyruvate dehydrogenase E1 alpha) at lysine 83, and the loss of SIRT3 leads to PDH activity decrease and lactate accumulation. Knocking down LDHA (lactate dehydrogenase A) or using carnosine, a buffer against lactic acid, attenuates IL-1β secretion. Furthermore, the blockade of IL-1β from macrophages into brown adipocytes restores thermogenic markers and mitochondrial oxygen consumption. Moreover, NLRP3 knockout (NLRP3) mice exhibited reduced IL-1β production while rescuing the mitochondrial function of brown adipocytes and alleviating perivascular adipose tissue fibrosis. CONCLUSIONS:SIRT3 represents a potential therapeutic target to attenuate NLRP3-related inflammation. Pharmacological targeting of glycolytic metabolism may represent an effective therapeutic approach.
This KO model may be useful for:
- Inflammasome activation and NLRC4 deacetylation studies
- Heterochromatin maintenance and senescence research
- Metabolic switch and macrophage function analysis in cardiovascular contexts
- Ang II-induced signaling and perivascular adipose tissue dysfunction studies
- Drug screening for sirtuin-related inflammatory and aging pathways
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