GO:0061769 nicotinate riboside kinase activity: Mechanism, Genes and Research Methods
Research-grade guide for scientists and biopharma professionals
Key Takeaways
• GO:0061769 (nicotinate riboside kinase activity) catalyzes the ATP-dependent phosphorylation of N-ribosylnicotinate to nicotinate mononucleotide, a reaction directly relevant to NAD+ salvage.
• The reaction consumes ATP and releases ADP and two protons, converting a riboside into a mononucleotide.
• Nicotinate riboside kinase activity has been biochemically detected in plants, including mungbean seedlings, where it supports nicotinate riboside salvage.
• In human cells, nicotinic acid riboside can be imported by equilibrative nucleoside transporters before intracellular phosphorylation, linking transport to this enzymatic step.
• The enzyme belongs to the molecular_function ontology and is distinct from nicotinamide riboside kinases and nicotinic acid phosphoribosyltransferases.
• Studying this activity benefits from CRISPR knockout, point-mutation, knock-in, and overexpression models combined with metabolomics and flux analysis [1,2].
Description
Nicotinate riboside kinase activity (GO:0061769) is a molecular function defined by the reaction N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide. This activity sits at the intersection of nucleoside salvage and NAD+ biosynthesis, because it converts a ribosylated form of nicotinic acid into a mononucleotide that can enter pyridine nucleotide pools. For researchers, the term provides a precise ontology handle for annotating enzymes that phosphorylate nicotinate riboside rather than nicotinamide riboside or free nicotinic acid. The reaction is ATP-dependent and produces ADP and protons, making it experimentally tractable by kinase assays, mass spectrometry, and pH-sensitive readouts. In plants, nicotinate riboside kinase activity was demonstrated in mungbean seedlings, supporting the existence of a salvage route for nicotinate riboside. In human cells, nicotinic acid riboside is imported by equilibrative nucleoside transporters, after which intracellular phosphorylation can generate nicotinate mononucleotide. Because NAD+ metabolism is central to redox biology, DNA repair, and signaling, enzymes annotated with GO:0061769 are of interest in metabolic, cancer, and neurodegeneration research [1,2]. This article summarizes the definition, mechanism, related genes, disease links, and experimental strategies for studying nicotinate riboside kinase activity.
nicotinate riboside kinase activity At A Glance
| GO ID | GO:0061769 |
|---|---|
| GO term | nicotinate riboside kinase activity |
| Ontology | molecular_function |
| Synonym | nicotinic acid riboside kinase activity; ribosylnicotinate kinase activity; ribosylnicotinic acid kinase activity |
| Definition | Catalysis of the reaction: N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide |
| Major function | ATP-dependent phosphorylation of nicotinate riboside to nicotinate mononucleotide |
| Reaction direction | N-ribosylnicotinate + ATP to ADP + 2 H+ + nicotinate mononucleotide |
| Pathway context | Pyridine nucleotide salvage and NAD+ biosynthesis |
| Experimental evidence | Biochemical detection in mungbean seedlings and transport-linked metabolism in human cells |
What Is GO:0061769?
GO:0061769, nicotinate riboside kinase activity, is a molecular function describing catalysis of the reaction N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide. In simpler terms, it is the enzyme activity that attaches a phosphate group from ATP onto nicotinate riboside, producing nicotinate mononucleotide, ADP, and protons. The term is synonymous with nicotinic acid riboside kinase activity, ribosylnicotinate kinase activity, and ribosylnicotinic acid kinase activity. It is classified under molecular_function in the Gene Ontology and is mechanistically related to other riboside kinases that feed NAD+ salvage pathways [1,2].
Why Is nicotinate riboside kinase activity Important in Cell Biology?
Nicotinate riboside kinase activity is important because it provides a direct enzymatic route from nicotinate riboside to nicotinate mononucleotide, a key intermediate in NAD+ biosynthesis. NAD+ is required for redox reactions, DNA repair, and signaling, so enzymes that control its salvage intermediates can influence cellular stress responses and metabolic homeostasis [1,2]. In human cells, the availability of nicotinic acid riboside depends on equilibrative nucleoside transporters, making this kinase activity part of a transport-metabolism axis. In plants, the detection of nicotinate riboside kinase in mungbean seedlings indicates that this salvage activity operates in diverse organisms. Researchers studying metabolic disease, cancer, and neurodegeneration therefore need reliable tools to test whether candidate genes carry this activity [1,2].
• Defines a specific ATP-dependent step in NAD+ salvage from nicotinate riboside.
• Connects extracellular nicotinic acid riboside uptake to intracellular nucleotide production.
• Provides an ontology annotation for distinguishing riboside kinases from phosphoribosyltransferases.
• Supports comparative studies of NAD+ metabolism across plants and animals.
• Offers a biochemical target for metabolic engineering of pyridine nucleotide pools.
• Helps interpret metabolomic shifts in nicotinate mononucleotide and related intermediates [1,2].
• Enables mechanistic dissection of transport-coupled NAD+ precursor utilization.
• Guides CRISPR-based validation of candidate genes annotated with GO:0061769 [1,2].
Molecular Mechanism of nicotinate riboside kinase activity
Substrate recognition and binding
In simple terms: The enzyme first grabs its two starting materials, nicotinate riboside and ATP.
Nicotinate riboside kinase activity requires N-ribosylnicotinate and ATP as substrates, as specified by the GO definition of the reaction N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide. The riboside substrate is a pyridine ring linked to ribose, and its recognition distinguishes this activity from kinases that act on nicotinamide riboside or free nicotinic acid. In human cells, nicotinic acid riboside can be supplied through equilibrative nucleoside transporters, meaning substrate availability is influenced by transport before the kinase step. Biochemical detection of this activity in mungbean seedlings supports the presence of a dedicated enzyme that binds nicotinate riboside.
Phosphoryl transfer from ATP
In simple terms: ATP donates a phosphate group to the riboside, turning ATP into ADP.
The catalytic event of GO:0061769 is phosphoryl transfer from ATP to N-ribosylnicotinate, yielding ADP and nicotinate mononucleotide. This is an ATP-dependent kinase reaction, and the release of two protons is part of the balanced equation. The product nicotinate mononucleotide is a mononucleotide intermediate that can feed pyridine nucleotide biosynthesis. Because the reaction consumes ATP, assays for this activity typically monitor ATP depletion or ADP formation alongside product generation.
Product formation and pathway entry
In simple terms: The newly made nicotinate mononucleotide can enter NAD+-building pathways.
The product of nicotinate riboside kinase activity is nicotinate mononucleotide, which is a precursor in NAD+ biosynthesis. This links GO:0061769 to salvage pathways that recycle pyridine rings rather than building them from scratch. In human cells, the upstream import of nicotinic acid riboside by equilibrative nucleoside transporters determines how much substrate reaches the kinase. Therefore, the activity should be interpreted in the context of both transport and downstream nucleotide metabolism [1,2].
Regulation and metabolic context
In simple terms: The activity does not work in isolation; it depends on substrate supply and cellular metabolic state.
Regulation of nicotinate riboside kinase activity is not fully defined in the provided literature, but its dependence on ATP and nicotinate riboside means it is sensitive to energy status and precursor availability. In human cells, equilibrative nucleoside transporters mediate the import of nicotinamide riboside and nicotinic acid riboside, indirectly controlling substrate access to the kinase. In plants, the presence of the activity in mungbean seedlings suggests developmental or tissue-specific regulation of nicotinate riboside salvage. Researchers should therefore measure both transporter expression and kinase activity when studying this pathway [1,2].
Key Genes Involved in GO:0061769 nicotinate riboside kinase activity
The following genes and proteins are relevant to nicotinate riboside kinase activity, either as candidate enzymes, transporters, or pathway components supported by the cited literature.
| Gene | Major Role | Research Relevance |
|---|---|---|
| Nicotinate riboside kinase (plant) | Catalyzes phosphorylation of nicotinate riboside | Biochemical detection in mungbean seedlings |
| ENT1 (SLC29A1) | Equilibrative nucleoside transporter | Mediates import of nicotinamide riboside and nicotinic acid riboside in human cells |
| ENT2 (SLC29A2) | Equilibrative nucleoside transporter | Contributes to nicotinic acid riboside uptake |
| NAMPT | Nicotinamide phosphoribosyltransferase | Context for NAD+ salvage intermediates |
| NMNAT | Nicotinamide mononucleotide adenylyltransferase | Downstream use of mononucleotide products |
| NRK | Nicotinamide riboside kinase | Related riboside kinase for comparison |
| NPT | Nicotinate phosphoribosyltransferase | Alternative route to nicotinate mononucleotide |
| NADSYN | NAD synthetase | Downstream NAD+ biosynthesis |
| QPRT | Quinolinate phosphoribosyltransferase | Pyridine nucleotide pathway context |
| NAPRT | Nicotinate phosphoribosyltransferase | Distinct from GO:0061769 activity |
| SLC29A family | Nucleoside transport | Controls substrate availability |
| NAD+ salvage enzymes | Pyridine nucleotide recycling | Pathway context for GO:0061769 |
| Plant salvage enzymes | Nicotinate riboside metabolism | Demonstrated in mungbean seedlings |
| Human NAD+ precursors | Nicotinic acid riboside utilization | Transport-linked metabolism |
How Is nicotinate riboside kinase activity Regulated?
Regulation of nicotinate riboside kinase activity is not fully resolved in the available literature. The activity depends on ATP and N-ribosylnicotinate, so energy status and substrate supply are likely regulatory inputs. In human cells, equilibrative nucleoside transporters mediate the import of nicotinamide riboside and nicotinic acid riboside, thereby controlling substrate availability for intracellular phosphorylation. In plants, detection of the activity in mungbean seedlings suggests developmental or tissue-specific control of nicotinate riboside salvage. Researchers should therefore assess transporter expression, ATP levels, and precursor availability when studying this activity [1,2].
nicotinate riboside kinase activity and Human Disease
| Gene | Disease / Biology | Potential Experimental Model |
|---|---|---|
| Nicotinate riboside kinase (candidate) | NAD+ salvage and metabolic stress | CRISPR knockout in human cell lines |
| SLC29A1 (ENT1) | Nicotinic acid riboside uptake | Knockout and transport assays |
| SLC29A2 (ENT2) | Nicotinic acid riboside uptake | Knockout and transport assays |
| NAMPT | NAD+ biosynthesis | Overexpression and metabolomics |
| NMNAT | NAD+ biosynthesis | Knock-in reporter models |
NAD+ metabolism and metabolic stress
Nicotinate riboside kinase activity contributes to NAD+ salvage by converting nicotinate riboside to nicotinate mononucleotide. Because NAD+ is central to redox balance and cellular stress responses, altered flux through this step could influence metabolic phenotypes. In human cells, the import of nicotinic acid riboside by equilibrative nucleoside transporters links this activity to precursor availability and metabolic state.
Cancer and proliferative metabolism
Cancer cells often depend on NAD+ salvage to support rapid proliferation, making enzymes in pyridine nucleotide pathways of interest. Although direct disease associations for GO:0061769 are not established in the provided literature, the activity feeds nicotinate mononucleotide, a precursor for NAD+. Transport-mediated uptake of nicotinic acid riboside in human cells further supports a potential role in precursor-driven NAD+ supply.
Neurodegeneration and cellular resilience
NAD+ depletion is implicated in neuronal stress and degeneration, and salvage pathways help maintain NAD+ pools. Nicotinate riboside kinase activity represents one route into nicotinate mononucleotide, which can support NAD+ biosynthesis. Human cells can import nicotinic acid riboside via equilibrative nucleoside transporters, connecting this activity to precursor-based interventions.
From nicotinate riboside kinase activity-Related Genes to Experimental Models
| Research Question | Suitable Model |
|---|---|
| Does a candidate gene encode nicotinate riboside kinase activity? | CRISPR knockout followed by biochemical kinase assay |
| Which residues are required for catalysis? | Point-mutation knock-in of catalytic residues |
| Can the activity be tracked in live cells? | Tagged knock-in with fluorescent or affinity tag |
| Does overexpression alter NAD+ intermediates? | Overexpression cell model with metabolomics |
| Do transporters control substrate supply? | Knockout of SLC29A1/SLC29A2 with precursor treatment |
| Is the activity conserved in plants? | Plant seedling biochemical assays |
How to Study the nicotinate riboside kinase activity Process
| Method | What It Measures | Typical Application |
|---|---|---|
| Kinase assay | ADP or nicotinate mononucleotide formation | Detecting GO:0061769 activity in lysates |
| LC-MS metabolomics | Pyridine nucleotide intermediates | Quantifying pathway flux |
| Isotope tracing | Label incorporation into NAD+ intermediates | Determining precursor contribution |
| Transport assay | Uptake of nicotinic acid riboside | Testing SLC29A1/SLC29A2 function |
| CRISPR knockout | Loss of gene function | Testing requirement for the activity |
| Overexpression | Increased gene dosage | Testing sufficiency for metabolite changes |
| Western blot | Protein expression levels | Validating knockout or knock-in |
| qPCR | Transcript levels | Assessing pathway gene expression |
Biochemical kinase assays
Direct measurement of nicotinate riboside kinase activity can be performed by incubating N-ribosylnicotinate with ATP and detecting ADP or nicotinate mononucleotide formation. Such assays were used to demonstrate the activity in mungbean seedlings. Coupling to ATP-regenerating or ADP-detecting systems allows quantitative comparison across samples.
Metabolomics and flux analysis
Metabolomic profiling can quantify nicotinate mononucleotide and related pyridine nucleotides after precursor supply. In human cells, nicotinic acid riboside import by equilibrative nucleoside transporters can be combined with metabolomics to trace flux into NAD+ intermediates. Stable-isotope labeling can further resolve the contribution of GO:0061769 to NAD+ pools.
Transport and uptake assays
Because nicotinic acid riboside uptake is mediated by equilibrative nucleoside transporters, uptake assays are important for interpreting kinase activity in intact cells. Knockout or inhibition of SLC29A1 and SLC29A2 can reveal how transport limits substrate availability. These assays complement direct enzymatic measurements [1,2].
Genetic and CRISPR screens
CRISPR knockout and overexpression models can test whether candidate genes are required for nicotinate riboside-dependent NAD+ production. Point mutations can separate catalytic activity from scaffolding functions. Combining genetic models with metabolomics provides causal evidence for GO:0061769 in cellular metabolism [1,2].
How CRISPR Can Be Used to Study GO:0061769 nicotinate riboside kinase activity
Knockout
CRISPR knockout of candidate genes can test whether a specific enzyme is required for nicotinate riboside kinase activity in cells. Loss-of-function clones can be challenged with nicotinic acid riboside and analyzed by metabolomics to detect changes in nicotinate mononucleotide. Knockout of transporters such as SLC29A1 or SLC29A2 can separate uptake effects from intracellular phosphorylation.
Point Mutation
Point-mutation models can mutate predicted catalytic residues to distinguish kinase activity from other functions. Such models are useful when a gene has multiple domains or activities. Comparing wild-type and point-mutant cells after precursor treatment reveals the specific contribution of GO:0061769.
Knock-in
Knock-in of epitope or fluorescent tags allows detection and localization of the candidate enzyme. Tagged knock-in can also enable affinity purification for in vitro kinase assays. This approach helps confirm that the tagged protein retains catalytic activity.
Overexpression
Overexpression models can test whether increased enzyme levels raise nicotinate mononucleotide or NAD+ intermediates. They are useful for gain-of-function experiments when knockout phenotypes are subtle. Combining overexpression with transporter knockout clarifies whether substrate import is limiting.
How EDITGENE Supports nicotinate riboside kinase activity Research
Researchers studying nicotinate riboside kinase activity-related genes often need to determine whether a candidate gene is causally involved in the reaction N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide. This requires precise genetic models that can remove, mutate, tag, or overexpress the candidate gene and then measure downstream metabolites [1,2]. EDITGENE provides CRISPR-based services tailored to these needs.
Contact EDITGENE today to design your custom CRISPR model for nicotinate riboside kinase activity research.
Frequently Asked Questions About nicotinate riboside kinase activity
What is nicotinate riboside kinase activity?
It is the enzyme activity defined by GO:0061769 that catalyzes N-ribosylnicotinate + ATP = ADP + 2 H+ + nicotinate mononucleotide.
What is the GO ID for nicotinate riboside kinase activity?
The GO ID is GO:0061769, classified under molecular_function.
What reaction does GO:0061769 catalyze?
It catalyzes the ATP-dependent phosphorylation of nicotinate riboside to nicotinate mononucleotide, producing ADP and protons.
What genes are involved in nicotinate riboside kinase activity?
Candidate genes include nicotinate riboside kinases and related salvage enzymes, while SLC29A1 and SLC29A2 control precursor uptake in human cells [1,2].
Is nicotinate riboside kinase activity found in plants?
Yes, biochemical evidence supports its presence in mungbean seedlings.
How is nicotinic acid riboside imported into human cells?
Equilibrative nucleoside transporters mediate the import of nicotinamide riboside and nicotinic acid riboside into human cells.
What is the product of nicotinate riboside kinase activity?
The product is nicotinate mononucleotide, a precursor in NAD+ biosynthesis.
How can I study GO:0061769 in the lab?
Biochemical kinase assays, metabolomics, transport assays, and CRISPR knockout or overexpression models can be used [1,2].
Does nicotinate riboside kinase activity relate to NAD+?
Yes, it feeds nicotinate mononucleotide into pyridine nucleotide and NAD+ biosynthesis pathways.
What CRISPR models are useful for this activity?
Knockout, point-mutation, knock-in, and overexpression models help test causality and mechanism.
Conclusion
Nicotinate riboside kinase activity (GO:0061769) is a defined molecular function that converts nicotinate riboside to nicotinate mononucleotide using ATP. Its connection to NAD+ salvage and precursor transport makes it relevant to metabolic, cancer, and neurodegeneration research [1,2]. Biochemical evidence in plants and transport-linked studies in human cells provide a foundation for further mechanistic work [1,2]. CRISPR-based knockout, point-mutation, knock-in, and overexpression models offer robust ways to test candidate genes and their metabolic consequences.
References
- 1. Matsui A et al.. 2008. Nicotinate riboside salvage in plants: presence of nicotinate riboside kinase in mungbean seedlings.. Plant Physiol Biochem 46(1):104-8 PMID: 18042392
- 2. Kropotov A et al.. 2021. Equilibrative Nucleoside Transporters Mediate the Import of Nicotinamide Riboside and Nicotinic Acid Riboside into Human Cells.. Int J Mol Sci 22(3) PMID: 33573263