GO:0140773 NAD-dependent protein demyristoylase activity: Mechanism, Genes and Research Methods
Research-grade guide for scientists and biopharma professionals
Key Takeaways
• GO:0140773 describes the enzymatic removal of a myristoyl (C14:0) fatty-acyl group from lysine residues on proteins, using NAD+ as a co-substrate.
• The reaction consumes NAD+ and releases nicotinamide, tetradecanoyl-ADP-ribose, and the demyristoylated protein, placing this activity within the sirtuin family of NAD+-dependent deacylases.
• SIRT2 was the first enzyme shown to possess efficient demyristoylase activity, with kinetic and structural studies revealing a hydrophobic acyl-binding pocket that accommodates long-chain fatty acyl groups.
• SIRT6 lysine-demyristoylates ATF2, and this modification regulates the PRKCD/VE-cadherin pathway to protect the vascular endothelial barrier.
• Demyristoylation is mechanistically distinct from depalmitoylation and deacetylation, and its dysregulation is linked to vascular injury, inflammation, and metabolic stress.
• Studying GO:0140773 requires combining enzyme kinetics, structural biology, and CRISPR-based models to dissect substrate specificity and physiological roles.
Description
NAD-dependent protein demyristoylase activity (GO:0140773) is a molecular function that catalyzes the removal of a myristoyl group from a modified lysine residue on a target protein, using NAD+ as an essential co-substrate. This activity belongs to the sirtuin class of enzymes, which couple deacylation to NAD+ hydrolysis and produce nicotinamide and an acyl-ADP-ribose intermediate. The reaction is chemically defined as N6-tetradecanoyl-L-lysyl-[protein] + NAD+ + H2O = tetradecanoyl-ADP-ribose + L-lysyl-[protein] + nicotinamide, and it represents a key regulatory mechanism for dynamic protein lipidation. Researchers are increasingly interested in demyristoylation because it reverses a hydrophobic modification that controls protein localization, stability, and interactions. Unlike irreversible lipid modifications, demyristoylation allows cells to rapidly remodel signaling complexes in response to metabolic and stress cues. The discovery that SIRT2 efficiently removes myristoyl groups from peptide substrates established this activity as a bona fide enzymatic function rather than a secondary side reaction. More recently, SIRT6 was shown to demyristoylate ATF2, linking this activity directly to vascular endothelial barrier protection through the PRKCD/VE-cadherin pathway. For biomedical researchers, GO:0140773 provides a precise annotation for experiments involving fatty-acylation dynamics, sirtuin biology, and NAD+ metabolism. Understanding which enzymes carry this activity, which substrates they target, and how the reaction is regulated is essential for interpreting proteomic and functional data in cardiovascular, metabolic, and inflammatory disease models.
NAD-dependent protein demyristoylase activity At A Glance
| GO ID | GO:0140773 |
|---|---|
| GO term | NAD-dependent protein demyristoylase activity |
| Ontology | molecular_function |
| Synonym | None listed in QuickGO |
| Major function | Catalyzes removal of a myristoyl group from N6-tetradecanoyl-L-lysyl-[protein] using NAD+ and water |
| Reaction products | Tetradecanoyl-ADP-ribose, L-lysyl-[protein], and nicotinamide |
| Enzyme family | Sirtuin family of NAD+-dependent deacylases |
| Representative enzymes | SIRT2 and SIRT6 |
| Substrate example | Myristoylated ATF2 |
| Cofactor | NAD+ |
What Is GO:0140773?
In simple terms, GO:0140773 describes an enzyme that acts like a molecular eraser: it removes a 14-carbon fatty acid called myristate from a lysine residue on a protein. The reaction requires NAD+ and water, and it produces three products: the demyristoylated protein, nicotinamide, and tetradecanoyl-ADP-ribose. This definition is based on the QuickGO entry for GO:0140773 and reflects the catalytic chemistry shared by NAD+-dependent sirtuin deacylases.
Why Is NAD-dependent protein demyristoylase activity Important in Cell Biology?
GO:0140773 matters because it defines a reversible, NAD+-dependent mechanism for controlling protein lipidation, a process that influences membrane targeting, protein-protein interactions, and signal transduction. The activity connects cellular energy status, via NAD+ availability, to the dynamic regulation of fatty-acylated proteins, making it a focal point for research on metabolic stress, inflammation, and vascular biology. Because sirtuins such as SIRT2 and SIRT6 can remove long-chain acyl groups, demyristoylation provides a biochemical explanation for how cells fine-tune signaling beyond classical acetylation.
• Provides a reversible mechanism for removing myristate from lysine residues, complementing irreversible N-terminal myristoylation.
• Links NAD+ metabolism to protein lipidation and signaling, connecting energy status to cellular responses.
• SIRT2 exhibits efficient demyristoylase activity, expanding the known substrate repertoire of sirtuins beyond acetyl groups.
• SIRT6-mediated demyristoylation of ATF2 protects the vascular endothelial barrier via the PRKCD/VE-cadherin pathway.
• Demyristoylation can influence protein localization and stability by removing a hydrophobic membrane anchor.
• Dysregulation of demyristoylation is implicated in vascular injury and endothelial dysfunction.
• The activity is relevant to inflammatory signaling because ATF2 is a stress-responsive transcription factor.
• Enzymatic and structural studies of demyristoylation inform drug discovery targeting sirtuin deacylases.
• GO:0140773 enables precise annotation of proteomic and functional datasets involving fatty-acylated proteins.
• Understanding demyristoylation helps distinguish it from depalmitoylation and deacetylation in experimental design.
Molecular Mechanism of NAD-dependent protein demyristoylase activity
Substrate recognition and acyl-chain binding
In simple terms: The enzyme must first grab the myristoylated protein and fit the fatty acid chain into a pocket.
NAD-dependent demyristoylases recognize N6-tetradecanoyl-L-lysyl-[protein] substrates through a binding cleft that accommodates the 14-carbon myristoyl chain. Structural studies of SIRT2 revealed a hydrophobic tunnel that can accommodate long-chain acyl groups, explaining why this enzyme efficiently removes myristate rather than only acetyl groups. The substrate specificity is determined by the shape and hydrophobicity of this acyl-binding pocket, which distinguishes demyristoylases from deacetylases.
NAD+ binding and co-substrate activation
In simple terms: NAD+ acts as a molecular tool that the enzyme uses to cleave the fatty acid off the protein.
The catalytic cycle requires NAD+ binding in a conserved Rossmann-fold domain typical of sirtuins. NAD+ is cleaved during the reaction, and the ADP-ribose moiety is transferred to the acyl group, forming tetradecanoyl-ADP-ribose as a product. This NAD+ dependence directly couples demyristoylase activity to cellular energy and redox status.
Catalysis and product release
In simple terms: The enzyme cuts the bond between the fatty acid and the protein, then releases the pieces.
Following NAD+ cleavage, the enzyme forms a covalent or tightly bound acyl-ADP-ribose intermediate that facilitates removal of the myristoyl group from the lysine side chain. The reaction yields three products: the demyristoylated protein, nicotinamide, and tetradecanoyl-ADP-ribose. Kinetic studies of SIRT2 demonstrated efficient turnover with myristoylated substrates, confirming that demyristoylation is an intrinsic catalytic activity rather than a slow side reaction.
Physiological substrate example: ATF2 demyristoylation by SIRT6
In simple terms: SIRT6 removes myristate from ATF2, which changes how ATF2 controls blood vessel barrier genes.
SIRT6 lysine-demyristoylates ATF2, and this modification ameliorates vascular injury by regulating the PRKCD/VE-cadherin pathway and the vascular endothelial barrier. This example demonstrates that demyristoylation can directly alter transcription factor function and downstream signaling in a physiologically relevant context. The finding links GO:0140773 to endothelial barrier integrity and vascular disease mechanisms.
Regulation by NAD+ availability and cellular stress
In simple terms: Because the enzyme needs NAD+, its activity rises and falls with the cell's energy state.
Since NAD+ is an obligatory co-substrate, demyristoylase activity is sensitive to changes in cellular NAD+ levels, which fluctuate with metabolic stress and aging. Sirtuin-mediated deacylation, including demyristoylation, is therefore positioned as a metabolic sensor that translates energy status into protein modification changes. This regulatory logic explains why demyristoylation is studied in contexts such as vascular injury and inflammation.
Key Genes Involved in GO:0140773 NAD-dependent protein demyristoylase activity
The following genes and proteins are directly implicated in NAD-dependent protein demyristoylase activity or its physiological consequences, based on the verified literature.
| Gene | Major Role | Research Relevance |
|---|---|---|
| SIRT2 | Efficient NAD-dependent demyristoylase; removes myristoyl groups from peptide substrates | Kinetic and structural studies of demyristoylation; sirtuin substrate specificity |
| SIRT6 | Lysine-demyristoylates ATF2 to regulate vascular endothelial barrier | Vascular injury models; endothelial barrier function |
| ATF2 | Transcription factor substrate whose demyristoylation by SIRT6 alters signaling | Stress-responsive transcription; PRKCD/VE-cadherin pathway |
| PRKCD | Protein kinase C delta, downstream effector in SIRT6-ATF2 vascular pathway | Vascular endothelial barrier regulation |
| CDH5 (VE-cadherin) | Endothelial adherens junction protein affected by SIRT6-ATF2 demyristoylation axis | Endothelial barrier integrity assays |
| NAD+ (metabolite) | Essential co-substrate for the demyristoylation reaction | Metabolic stress and sirtuin activity studies |
| Nicotinamide | Product of the demyristoylation reaction; can feedback-inhibit sirtuins | Enzyme kinetics and inhibitor studies |
| Tetradecanoyl-ADP-ribose | Product of the demyristoylation reaction | Reaction mechanism and metabolite detection |
| Myristoyl-CoA (metabolite) | Donor of myristate for protein myristoylation, the reverse modification | Lipidation cycle studies |
| Sirtuin family (general) | NAD+-dependent deacylases including demyristoylases | Comparative enzymology of deacylation |
| N6-tetradecanoyl-L-lysyl-[protein] | Generic substrate for GO:0140773 | Substrate design for in vitro assays |
| L-lysyl-[protein] | Demyristoylated protein product | Product detection in enzymatic assays |
| NAD+ binding domain (Rossmann fold) | Structural module for NAD+ binding in sirtuins | Structural biology and mutagenesis |
| Hydrophobic acyl pocket | Structural feature enabling myristoyl chain recognition | Structure-function studies of SIRT2 |
| ATF2 target lysine | Site of myristoylation/demyristoylation regulated by SIRT6 | Site-specific mutagenesis and modification mapping |
| VE-cadherin complex | Junction protein complex influenced by demyristoylation pathway | Endothelial permeability assays |
How Is NAD-dependent protein demyristoylase activity Regulated?
NAD-dependent protein demyristoylase activity is regulated primarily by the availability of its obligate co-substrate NAD+, which fluctuates with cellular metabolic state and stress. Because the reaction consumes NAD+ and produces nicotinamide, product inhibition by nicotinamide can modulate enzyme turnover, a feature well documented for sirtuin deacylases. In the SIRT6-ATF2 axis, demyristoylation is embedded in a signaling cascade that controls PRKCD and VE-cadherin, indicating that upstream stress and inflammatory signals can influence the functional output of this activity. Structural determinants, including the hydrophobic acyl-binding pocket, also regulate substrate preference and catalytic efficiency.
NAD-dependent protein demyristoylase activity and Human Disease
| Gene | Disease / Biology | Potential Experimental Model |
|---|---|---|
| SIRT6 | Vascular injury and endothelial barrier dysfunction | Endothelial cell knockout and overexpression models |
| ATF2 | Stress-responsive transcription in vascular injury | Point-mutation of the modified lysine |
| SIRT2 | Sirtuin-associated metabolic and aging biology | Recombinant enzyme kinetics and structural studies |
| PRKCD | Downstream signaling in endothelial barrier regulation | Knockdown or knockout in endothelial cells |
| CDH5 (VE-cadherin) | Endothelial adherens junction integrity | Knock-in of tagged VE-cadherin for imaging |
Vascular injury and endothelial barrier dysfunction
SIRT6 lysine-demyristoylates ATF2 to ameliorate vascular injury via the PRKCD/VE-cadherin pathway, which regulates the vascular endothelial barrier. This places GO:0140773 at the intersection of protein deacylation and endothelial barrier integrity, suggesting that loss of demyristoylase activity could contribute to vascular leak and injury. Experimental models of endothelial barrier disruption are therefore relevant for studying this activity.
Metabolic and inflammatory stress
Because demyristoylation requires NAD+, conditions that alter NAD+ metabolism, such as metabolic stress and inflammation, can indirectly affect this activity. ATF2 is a stress-responsive transcription factor, and its demyristoylation by SIRT6 links the modification to stress signaling pathways. This connection supports investigating GO:0140773 in metabolic and inflammatory disease contexts.
Sirtuin-related pathologies
SIRT2 exhibits efficient demyristoylase activity, and sirtuins are widely studied in aging, neurodegeneration, and cancer. Although direct disease links for demyristoylation specifically remain an active area, the enzymatic properties of SIRT2 provide a foundation for exploring how this activity contributes to sirtuin-associated pathologies. Structural and kinetic data on SIRT2 demyristoylation can guide hypothesis-driven disease research.
From NAD-dependent protein demyristoylase activity-Related Genes to Experimental Models
| Research Question | Suitable Model |
|---|---|
| Does loss of SIRT6 demyristoylase activity disrupt endothelial barrier function? | SIRT6 knockout endothelial cells |
| Which lysine on ATF2 is demyristoylated by SIRT6? | ATF2 point-mutation at candidate lysine |
| Can a tagged ATF2 reporter track demyristoylation dynamics? | Knock-in of epitope-tagged ATF2 |
| Does SIRT2 overexpression increase demyristoylation of specific substrates? | SIRT2 overexpression cell lines |
| What is the kinetic efficiency of SIRT2 toward myristoylated peptides? | Recombinant SIRT2 with synthetic myristoylated substrates |
| Does NAD+ depletion reduce demyristoylase activity in cells? | Metabolic stress models with NAD+ modulation |
How to Study the NAD-dependent protein demyristoylase activity Process
| Method | What It Measures | Typical Application |
|---|---|---|
| Enzyme kinetics with myristoylated peptides | Catalytic efficiency and substrate specificity | Characterizing SIRT2 demyristoylase activity |
| X-ray crystallography | Three-dimensional structure of acyl-binding pocket | Structural basis of myristoyl recognition |
| Endothelial permeability assay | Barrier integrity and junction function | Testing SIRT6-ATF2 pathway effects |
| Western blot for VE-cadherin | Protein levels and junction marker expression | Vascular endothelial barrier studies |
| NAD+ quantification | Cellular co-substrate availability | Linking metabolism to demyristoylation |
| Mass spectrometry | Protein myristoylation status | Substrate identification and validation |
| Site-directed mutagenesis | Functional role of specific lysine residues | Mapping ATF2 demyristoylation site |
| Recombinant protein purification | Enzyme availability for in vitro assays | Biochemical characterization of SIRT2 |
Enzyme kinetics with myristoylated peptide substrates
Kinetic studies using synthetic myristoylated peptides allow direct measurement of demyristoylase catalytic efficiency and substrate specificity. These assays typically monitor NAD+ consumption or product formation, such as nicotinamide or tetradecanoyl-ADP-ribose. SIRT2 demyristoylase activity was established using such kinetic approaches.
Structural biology of acyl-binding pockets
X-ray crystallography and structural analysis of sirtuins reveal the hydrophobic acyl-binding pocket that accommodates the myristoyl chain. Structural studies of SIRT2 provided mechanistic insight into why long-chain acyl groups are efficiently removed. These methods help distinguish demyristoylases from deacetylases.
Cell-based assays of endothelial barrier function
Endothelial barrier integrity can be assessed using permeability assays and junction protein localization in cells expressing wild-type or mutant SIRT6 and ATF2. The SIRT6-ATF2-PRKCD-VE-cadherin axis provides a defined pathway for functional readouts. These assays connect molecular demyristoylation to physiological barrier function.
Proteomic and modification-specific detection
Detection of myristoylated versus demyristoylated proteins can be approached through modification-specific enrichment and mass spectrometry, guided by the known chemistry of GO:0140773. Comparing wild-type and enzyme-deficient cells helps identify candidate substrates. Such workflows are essential for mapping the substrate landscape of demyristoylases.
How CRISPR Can Be Used to Study GO:0140773 NAD-dependent protein demyristoylase activity
Knockout
CRISPR knockout of SIRT6 or SIRT2 enables loss-of-function studies to determine whether demyristoylase activity is required for specific phenotypes, such as endothelial barrier protection. Knockout endothelial cells can be used to test whether the SIRT6-ATF2-PRKCD-VE-cadherin axis depends on demyristoylation. Knockout of SIRT2 in cell lines can reveal which substrates depend on its demyristoylase activity.
Point Mutation
Point mutation of the candidate lysine on ATF2 that is demyristoylated by SIRT6 can test whether this specific modification mediates downstream signaling. Catalytic-dead point mutants of SIRT6 or SIRT2 can separate demyristoylase activity from other functions. These models are essential for causal inference in demyristoylation research.
Knock-in
Knock-in of epitope-tagged ATF2 or SIRT6 allows detection and tracking of the modified proteins in their native genomic context. Tagged knock-in models can facilitate immunoprecipitation and modification-specific assays without overexpression artifacts. This approach is valuable for studying endogenous demyristoylation events.
Overexpression
Overexpression of SIRT2 or SIRT6 can enhance demyristoylase activity and amplify downstream phenotypes, such as changes in endothelial barrier gene expression. Overexpression systems are useful for biochemical enrichment of demyristoylated proteins and for testing gain-of-function hypotheses. Combining overexpression with substrate mutants helps define specificity.
How EDITGENE Supports NAD-dependent protein demyristoylase activity Research
Researchers studying NAD-dependent protein demyristoylase activity-related genes often need to determine whether a candidate gene is causally involved in a specific phenotype, such as endothelial barrier protection or metabolic stress responses. EDITGENE provides CRISPR-based cell model services that enable precise genetic perturbations for such mechanistic studies.
Contact EDITGENE today to design your custom CRISPR model for NAD-dependent protein demyristoylase activity research.
Frequently Asked Questions About NAD-dependent protein demyristoylase activity
What is NAD-dependent protein demyristoylase activity?
It is a molecular function (GO:0140773) that removes a myristoyl group from a lysine residue on a protein using NAD+ and water, producing tetradecanoyl-ADP-ribose, the demyristoylated protein, and nicotinamide.
What genes are involved in NAD-dependent protein demyristoylase activity?
SIRT2 and SIRT6 are the primary enzymes with reported demyristoylase activity, and ATF2 is a physiological substrate of SIRT6-mediated demyristoylation.
Which enzyme has efficient demyristoylase activity?
SIRT2 was shown to have efficient demyristoylase activity through kinetic and structural studies.
How does SIRT6 demyristoylate ATF2?
SIRT6 lysine-demyristoylates ATF2, which ameliorates vascular injury via the PRKCD/VE-cadherin pathway regulating the vascular endothelial barrier.
What is the reaction catalyzed by GO:0140773?
The reaction is N6-tetradecanoyl-L-lysyl-[protein] + NAD+ + H2O = tetradecanoyl-ADP-ribose + L-lysyl-[protein] + nicotinamide.
Why is NAD+ required for demyristoylation?
NAD+ is an obligatory co-substrate that is cleaved during the reaction, coupling demyristoylation to cellular energy status.
What diseases are linked to demyristoylation?
SIRT6-mediated ATF2 demyristoylation is linked to vascular injury and endothelial barrier dysfunction, while SIRT2 demyristoylation is studied in sirtuin-associated pathologies.
How can I study demyristoylase activity in the lab?
Common approaches include enzyme kinetics with myristoylated peptides, structural biology, endothelial permeability assays, and CRISPR-based knockout or point-mutation models.
What is the difference between demyristoylation and deacetylation?
Demyristoylation removes a 14-carbon myristoyl group, whereas deacetylation removes a 2-carbon acetyl group; sirtuins such as SIRT2 can perform both but with different acyl-pocket preferences.
Can CRISPR be used to study GO:0140773?
Yes, CRISPR knockout, point mutation, knock-in, and overexpression models can be used to test the causal role of SIRT2, SIRT6, and ATF2 in demyristoylation-dependent phenotypes.
Conclusion
NAD-dependent protein demyristoylase activity (GO:0140773) is a chemically defined, NAD+-consuming enzymatic function that removes myristate from lysine residues on proteins. SIRT2 and SIRT6 are the best-characterized enzymes with this activity, and the SIRT6-ATF2-PRKCD-VE-cadherin axis provides a concrete physiological example linking demyristoylation to vascular endothelial barrier protection. As a molecular function annotation, GO:0140773 enables precise interpretation of experiments involving protein lipidation, sirtuin biology, and NAD+ metabolism. Future research using CRISPR-based models, structural biology, and modification-specific proteomics will help define the full substrate repertoire and disease relevance of demyristoylation. EDITGENE supports these efforts with customizable cell model and screening services tailored to demyristoylase research.
References
- 1. Feng R et al.. 2025. SIRT6 Lysine-Demyristoylates ATF2 to Ameliorate Vascular Injury via PRKCD/VE-Cadherin Pathway Regulating Vascular Endothelial Barrier.. Adv Sci (Weinh) 12(41):e04948 PMID: 40810740
- 2. Teng YB et al.. 2015. Efficient demyristoylase activity of SIRT2 revealed by kinetic and structural studies.. Sci Rep 5:8529 PMID: 25704306