GO:0007129 homologous chromosome pairing at meiosis: Mechanism, Genes, Functions and Research Methods
Research-grade guide for scientists and biopharma professionals
Key Takeaways
• GO:0007129 homologous chromosome pairing at meiosis describes the process where homologous chromosomes find each other and become physically juxtaposed during meiotic prophase.
• Pairing begins at clustered telomeres and progresses along chromosome arms until synaptonemal complex assembly is complete.
• Errors in homologous pairing lead to nondisjunction, aneuploidy, and are associated with infertility and developmental disorders.
• Key genes include SPO11, DMC1, RAD51, SYCP1, SYCP3, HOP2, MND1, and telomere-associated proteins like TERB1 and TERB2.
• Research methods include fluorescence microscopy, Hi-C, ChIP-seq, and CRISPR-based knockout or knock-in models.
• EDITGENE provides CRISPR services to model pairing defects, including knockout, point mutation, knock-in, and overexpression cell lines.
Description
Homologous chromosome pairing at meiosis (GO:0007129) is a fundamental biological process that ensures accurate chromosome segregation during gamete formation. This process involves the side-by-side alignment and physical juxtaposition of homologous chromosomes during meiotic prophase, beginning at clustered telomeres and ending with synaptonemal complex assembly. Defects in pairing lead to aneuploidy, which is a leading cause of miscarriage and developmental disorders in humans. Understanding the molecular mechanisms of homologous pairing is therefore critical for reproductive biology and cancer research.
homologous chromosome pairing at meiosis At A Glance
| GO ID | GO:0007129 |
|---|---|
| GO term | homologous chromosome pairing at meiosis |
| Ontology | biological_process |
| Synonym | chromosomal pairing, chromosomal synapsis, synapsis |
| Major function | Physical juxtaposition of homologous chromosomes during meiotic prophase |
| Starts | Clustered telomeres |
| Ends | Synaptonemal complex assembly complete |
| Related processes | Meiotic recombination, synapsis, chromosome segregation |
What Is GO:0007129?
GO:0007129 homologous chromosome pairing at meiosis is defined as the meiotic cell cycle process where side-by-side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Pairing begins when chromosome arms start to pair from clustered telomeres and ends when synaptonemal complex or linear element assembly is complete.
Why Is homologous chromosome pairing at meiosis Important in Cell Biology?
Homologous chromosome pairing is essential for faithful chromosome segregation during meiosis. Errors in this process cause nondisjunction, leading to aneuploid gametes, which are associated with infertility, miscarriage, and genetic disorders such as Down syndrome. Moreover, understanding pairing mechanisms has implications for cancer biology, as meiotic genes are sometimes aberrantly expressed in tumors.
• Ensures accurate chromosome segregation and genetic diversity.
• Defects cause aneuploidy, linked to infertility and developmental disorders.
• Key for understanding meiotic recombination and synapsis.
• Relevant to cancer research due to meiotic gene misexpression.
• Provides targets for reproductive medicine and contraception.
• Model organisms like yeast, plants, and mice reveal conserved mechanisms.
• Telomere-led pairing is a conserved feature in many eukaryotes.
• Non-homologous pairing can occur in haploids, affecting breeding.
• Pairing domains may form before meiosis in some species.
• CRISPR screens can identify novel pairing genes.
What Happens During homologous chromosome pairing at meiosis?
Telomere Clustering and Bouquet Formation
In simple terms: Chromosome ends gather together to help homologs find each other.
During early meiotic prophase, telomeres attach to the nuclear envelope and cluster to form a bouquet structure, which facilitates homologous chromosome pairing. This clustering is mediated by telomere-associated proteins such as TERB1 and TERB2 in mice.
Homolog Recognition and Alignment
In simple terms: Homologous chromosomes recognize and align side by side.
After telomere clustering, homologous chromosomes undergo recognition and alignment, potentially guided by recombination intermediates and specific pairing domains. In wheat, homologous associations in domains before meiosis may facilitate recognition.
Synaptonemal Complex Assembly
In simple terms: A protein zipper forms between homologs to stabilize pairing.
The synaptonemal complex (SC) assembles between aligned homologs, with SYCP1, SYCP2, and SYCP3 forming the transverse filaments and lateral elements. SC assembly marks the completion of pairing.
Recombination-Coupled Pairing
In simple terms: DNA breaks and repair help chromosomes pair.
Meiotic recombination, initiated by SPO11-induced double-strand breaks, promotes pairing and synapsis. DMC1 and RAD51 mediate strand invasion, which is essential for homolog juxtaposition.
Non-Homologous Pairing in Haploids
In simple terms: Even without homologs, chromosomes can pair abnormally.
In haploid Brassica rapa, non-homologous chromosome pairing occurs during meiosis, leading to aberrant segregation. This highlights the specificity of homologous pairing in diploids.
Key Genes Involved in GO:0007129 homologous chromosome pairing at meiosis
Key genes and proteins involved in homologous chromosome pairing at meiosis include those mediating telomere attachment, recombination, and synaptonemal complex formation.
| Gene | Major Role | Research Relevance |
|---|---|---|
| SPO11 | Initiates meiotic double-strand breaks | Knockout causes pairing defects |
| DMC1 | Meiotic recombinase | Essential for homolog pairing |
| RAD51 | Strand invasion | Cooperative with DMC1 |
| SYCP1 | Transverse filament of SC | Marker of synapsis |
| SYCP2 | SC lateral element | Knockout disrupts pairing |
| SYCP3 | SC lateral element | Mutations linked to infertility |
| HOP2 | Recombination mediator | Knockout impairs pairing |
| MND1 | Recombination mediator | Partners with HOP2 |
| TERB1 | Telomere attachment | Required for bouquet formation |
| TERB2 | Telomere attachment | Knockout affects pairing |
| MAJIN | Telomere attachment | Links telomeres to nuclear envelope |
| SUN1 | Nuclear envelope protein | Telomere attachment |
| KASH5 | Nuclear envelope protein | Telomere attachment |
| REC8 | Cohesin subunit | Required for pairing |
| SMC1B | Cohesin subunit | Meiosis-specific cohesin |
| STAG3 | Cohesin subunit | Mutations cause infertility |
| TEX11 | Recombination factor | Knockout causes meiotic arrest |
How Is homologous chromosome pairing at meiosis Regulated?
Homologous chromosome pairing is regulated by phosphorylation of telomere-associated proteins, such as CDK-dependent phosphorylation of TERB1, which controls telomere attachment to the nuclear envelope. Additionally, recombination checkpoint kinases like ATM and ATR monitor pairing and synapsis, delaying cell cycle progression if defects occur.
homologous chromosome pairing at meiosis and Human Disease
| Gene | Disease / Biology | Potential Experimental Model |
|---|---|---|
| SYCP3 | Premature ovarian failure | Knockout mouse |
| STAG3 | Infertility | Knockout mouse |
| SPO11 | Cancer | Overexpression cell line |
| DMC1 | Aneuploidy | Point mutation knock-in |
| TERB1 | Meiotic arrest | Knockout mouse |
Infertility and Aneuploidy
Defects in homologous chromosome pairing lead to meiotic arrest and aneuploid gametes, causing infertility and recurrent miscarriage. Mutations in SYCP3 and STAG3 are associated with premature ovarian failure.
Cancer
Meiotic genes such as SPO11 and DMC1 are aberrantly expressed in some cancers, contributing to genomic instability. Targeting pairing machinery may offer therapeutic opportunities.
Developmental Disorders
Nondisjunction due to pairing errors results in trisomies like Down syndrome (trisomy 21). Understanding pairing mechanisms can inform prenatal diagnostics.
From homologous chromosome pairing at meiosis-Related Genes to Experimental Models
| Research Question | Suitable Model |
|---|---|
| Does gene X regulate pairing? | Knockout cell line |
| Does mutation affect pairing? | Point mutation knock-in |
| Where does protein localize? | Tagged knock-in |
| Does overexpression disrupt pairing? | Overexpression cell line |
| What are downstream targets? | CRISPR library screening |
| What is the transcriptional response? | RNA-seq |
How to Study the homologous chromosome pairing at meiosis Process
| Method | What It Measures | Typical Application |
|---|---|---|
| Fluorescence microscopy | Protein localization and pairing | Visualizing SC formation |
| Hi-C | Chromosome interactions | Detecting homolog pairing |
| ChIP-seq | Protein-DNA binding | Mapping cohesin sites |
| RNA-seq | Gene expression | Transcriptional changes |
| CRISPR screen | Gene function | Identifying pairing genes |
| Live imaging | Dynamic pairing | Tracking telomere movement |
| Proteomics | Protein interactions | Identifying SC components |
Fluorescence Microscopy
Immunofluorescence using antibodies against SYCP1, SYCP3, and DMC1 visualizes pairing and synapsis.
Hi-C and Chromosome Conformation Capture
Hi-C measures physical interactions between chromosomal regions, revealing pairing dynamics.
ChIP-seq
ChIP-seq identifies binding sites of pairing proteins like REC8 and SYCP3 across the genome.
CRISPR Screens
Genome-wide CRISPR knockout screens can identify novel genes required for homologous pairing.
How CRISPR Can Be Used to Study GO:0007129 homologous chromosome pairing at meiosis
Knockout
CRISPR knockout of pairing genes like SYCP3 or DMC1 in cell lines or mice abolishes pairing, providing causal evidence.
Point Mutation
Introducing patient-derived point mutations (e.g., in SYCP3) via CRISPR knock-in recapitulates disease phenotypes.
Knock-in
Tagged knock-in of pairing proteins (e.g., GFP-SYCP1) allows live imaging of pairing dynamics.
Overexpression
Overexpression of pairing genes can disrupt stoichiometry and cause dominant-negative effects, useful for functional studies.
How EDITGENE Supports homologous chromosome pairing at meiosis Research
Researchers studying homologous chromosome pairing at meiosis-related genes often need to determine whether a candidate gene is causally involved in pairing, synapsis, or recombination. EDITGENE provides tailored CRISPR services to generate precisely engineered cell models for such investigations.
Contact EDITGENE today to design your custom CRISPR model for homologous chromosome pairing at meiosis research.
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| FANCD2 Knockout HEK293 Cell Line | EDJ-KQ2218 | Human | 2177 | Details Get a Quote |
| SYCP1 Knockout HEK293 Cell Line | EDJ-KQ5871 | Human | 6847 | Details Get a Quote |
| SYCP2 Knockout HEK293 Cell Line | EDJ-KQ7037 | Human | 10388 | Details Get a Quote |
| DMC1 Knockout HEK293 Cell Line | EDJ-KQ7303 | Human | 11144 | Details Get a Quote |
| SPIDR Knockout HEK293 Cell Line | EDJ-KQ8040 | Human | 23514 | Details Get a Quote |
| PSMC3IP Knockout HEK293 Cell Line | EDJ-KQ9068 | Human | 29893 | Details Get a Quote |
| M1AP Knockout HEK293 Cell Line | EDJ-KQ9260 | Human | 130951 | Details Get a Quote |
| KASH5 Knockout HEK293 Cell Line | EDJ-KQ9975 | Human | 147872 | Details Get a Quote |
| SPATA22 Knockout HEK293 Cell Line | EDJ-KQ10166 | Human | 84690 | Details Get a Quote |
| TERB2 Knockout HEK293 Cell Line | EDJ-KQ10450 | Human | 145645 | Details Get a Quote |
| SYCP3 Knockout HEK293 Cell Line | EDJ-KQ10764 | Human | 50511 | Details Get a Quote |
| ANKRD31 Knockout HEK293 Cell Line | EDJ-KQ11059 | Human | 256006 | Details Get a Quote |
| SYCE1 Knockout HEK293 Cell Line | EDJ-KQ11232 | Human | 93426 | Details Get a Quote |
| MEIOB Knockout HEK293 Cell Line | EDJ-KQ11771 | Human | 254528 | Details Get a Quote |
| SYCE2 Knockout HEK293 Cell Line | EDJ-KQ11817 | Human | 256126 | Details Get a Quote |
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Frequently Asked Questions About homologous chromosome pairing at meiosis
What is homologous chromosome pairing at meiosis?
It is the process where homologous chromosomes physically align during meiotic prophase, defined by GO:0007129.
What genes are involved in homologous chromosome pairing at meiosis?
Key genes include SPO11, DMC1, RAD51, SYCP1, SYCP3, HOP2, MND1, and telomere proteins like TERB1.
Why is homologous pairing important?
It ensures accurate chromosome segregation; defects cause aneuploidy and infertility.
How is homologous pairing studied?
Using fluorescence microscopy, Hi-C, ChIP-seq, and CRISPR screens.
What diseases are linked to pairing defects?
Infertility, miscarriage, Down syndrome, and some cancers.
What is the synaptonemal complex?
A protein structure that forms between homologs during pairing, composed of SYCP1, SYCP2, and SYCP3.
When does pairing start and end?
It starts at clustered telomeres and ends when synaptonemal complex assembly is complete.
Can pairing occur without recombination?
In some organisms, pairing can occur independently of recombination, but recombination generally promotes pairing.
What is non-homologous pairing?
It is abnormal pairing between non-homologous chromosomes, observed in haploids.
How can CRISPR help study pairing?
CRISPR enables knockout, knock-in, and point mutation models to test gene function.
Conclusion
Homologous chromosome pairing at meiosis (GO:0007129) is a cornerstone of sexual reproduction, ensuring genetic diversity and faithful chromosome segregation. Continued research using advanced CRISPR models and imaging techniques will unravel remaining mysteries and inform clinical applications.
References
- 1. Tian Y et al.. 2024. Homologous chromosome pairing: The linchpin of accurate segregation in meiosis.. J Cell Physiol 239(1):3-19 PMID: 38032002
- 2. You H et al.. 2024. Chromosome ends initiate homologous chromosome pairing during rice meiosis.. Plant Physiol 195(4):2617-2634 PMID: 38478471
- 3. Zickler D et al.. 2015. Recombination, Pairing, and Synapsis of Homologs during Meiosis.. Cold Spring Harb Perspect Biol 7(6) PMID: 25986558
- 4. Zickler D et al.. 2023. Meiosis: Dances Between Homologs.. Annu Rev Genet 57:1-63 PMID: 37788458
- 5. Yuan J et al.. 2021. Non-homologous chromosome pairing during meiosis in haploid Brassica rapa.. Plant Cell Rep 40(12):2421-2434 PMID: 34542669
- 7. De Jaeger-Braet J. 2024. Homologous chromosome pairing starts at the ends.. Plant Physiol 195(4):2475-2476 PMID: 38713592
- 8. Barea L et al.. 2022. Homologous chromosome associations in domains before meiosis could facilitate chromosome recognition and pairing in wheat.. Sci Rep 12(1):10597 PMID: 35732879
