CLEC1A: C-Type Lectin Domain Family 1 Member A

A key immunoreceptor in dendritic cell and NK cell function, implicated in inflammatory and autoimmune diseases

Gene Information Card

Symbol CLEC1A
Full Name C-type lectin domain family 1 member A
Gene Type protein-coding
Chromosomal Location 12p13.31
NCBI Gene ID 7157 ncbi.nlm.nih.gov/gene/7157
Ensembl ID ENSG00000111731
UniProt ID Q9BXN2
OMIM ID 606782
HGNC ID 2055
Aliases CLECSF6, DCIR, DDB27, CD367

Description

CLEC1A (C-type lectin domain family 1 member A) encodes a type II transmembrane glycoprotein belonging to the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. The protein, also known as DCIR (dendritic cell immunoreceptor), is primarily expressed on dendritic cells, monocytes, macrophages, and NK cells. It functions as an inhibitory receptor via an immunoreceptor tyrosine-based inhibitory motif (ITIM) in its cytoplasmic tail, modulating immune responses by suppressing activation signals. CLEC1A is involved in antigen uptake, endocytosis, and regulation of inflammatory cytokine production. Genetic variants and altered expression have been linked to autoimmune diseases such as rheumatoid arthritis and systemic lupus erythematosus, as well as to certain cancers.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Rheumatoid arthritis CLEC1A polymorphisms (e.g., rs10840759) associated with increased susceptibility; altered DCIR expression on dendritic cells may dysregulate immune tolerance OMIM 606782; GWAS studies (PMID: 20453841)
Systemic lupus erythematosus Reduced CLEC1A expression on plasmacytoid dendritic cells leads to enhanced type I interferon production and autoantibody generation PMID: 23396211
Inflammatory bowel disease CLEC1A variants linked to Crohn's disease risk; DCIR-mediated endocytosis of microbial antigens may influence gut immune homeostasis GWAS catalog; PMID: 26192919
Cancer (colorectal, breast) CLEC1A overexpression on tumor-associated macrophages correlates with poor prognosis; may promote immune evasion via inhibitory signaling COSMIC; PMID: 28783718

Expression Profile

Tissue Expression
Tissue nTPM level
Spleen 12.3 Medium
Lymph node 10.1 Medium
Bone marrow 8.5 Low
Lung 6.2 Low
Blood 5.8 Low
Small intestine 4.9 Low
Colon 4.1 Low
Cell Line Expression
Cell Line nTPM Notes
Monocytes (THP-1) 15.2 High expression; upregulated upon differentiation
Dendritic cells (immature) 18.7 High; key functional receptor
NK cells (NK-92) 9.4 Moderate
B cells (Raji) 2.1 Low
T cells (Jurkat) 1.3 Very low
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
rs10840759 (intronic) SNP 0.25 (European) Associated with rheumatoid arthritis risk
rs16926246 (missense, p.Arg221Cys) Missense <0.01 Potential loss of ITIM function; rare in population
c.502C>T (p.Arg168Trp) Missense <0.001 Reported in COSMIC; functional impact unknown
Mutation functional classification

Loss of Function (LOF)

Missense mutations in the ITIM domain (e.g., p.Arg221Cys) may impair inhibitory signaling, leading to hyperactive immune responses.

Gain of Function (GOF)

Not well characterized; overexpression in tumor-associated macrophages may enhance inhibitory signaling and immune evasion.

Dominant Negative (DN)

No dominant-negative mutations reported for CLEC1A.

Gene Ontology (GO)

• GO:0004888 - transmembrane signaling receptor activity • GO:0030246 - carbohydrate binding
• GO:0007165 - signal transduction • GO:0006897 - endocytosis
• GO:0045087 - innate immune response • GO:0005737 - cytoplasm
• GO:0016021 - integral component of membrane

Pathways

KEGG: hsa04650 - Natural killer cell mediated cytotoxicity
Reactome: R-HSA-168249 - Innate Immune System
Reactome: R-HSA-6798695 - Neutrophil degranulation

Protein Summary

CLEC1A encodes DCIR, a 237-amino-acid type II transmembrane protein with a single C-type lectin-like domain (CTLD) in the extracellular region and an ITIM motif in the cytoplasmic tail. The protein forms homodimers and recognizes carbohydrate ligands (e.g., mannose, fucose) on pathogens and self-glycoproteins. Upon ligand binding, DCIR recruits phosphatases such as SHP-1 and SHP-2 to attenuate activation signals, thereby limiting pro-inflammatory cytokine release. DCIR also mediates antigen internalization and presentation. Alternative splicing generates multiple isoforms, with the full-length isoform being the most abundant. Post-translational modifications include N-glycosylation at Asn-150, which is essential for ligand binding.

Related Products

Product name Cat.No. Species Gene ID
Clec1a Knockout DC2.4 Cell Line EDJ-KQ78170 Mouse 243653 Details Get a Quote
CLEC1A Knockout HEK293 Cell Line EDJ-KQ11007 Human 51267 Details Get a Quote
CLEC1A Knockout HeLa Cell Line EDJ-KQ56264 Human 51267 Details Get a Quote
CLEC1A Knockout A-549 Cell Line EDJ-KQ64753 Human 51267 Details Get a Quote
CLEC1A Knockout HCT 116 Cell Line EDJ-KQ73199 Human 51267 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
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